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Mutant Information

Mutant Name	FN-81 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-81 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14281916 G-A Hetero INTERGENIC
SBS Chr1 29119959 G-C Hetero INTERGENIC
SBS Chr2 13803269 G-T Homo INTERGENIC
SBS Chr2 20714329 A-G Hetero INTERGENIC
SBS Chr2 26882234 T-C Homo INTERGENIC
SBS Chr2 28795824 C-T Hetero INTERGENIC
SBS Chr3 24244207 C-T Homo INTERGENIC
SBS Chr3 33801231 T-A Homo INTERGENIC
SBS Chr4 9379527 C-G Hetero INTERGENIC
SBS Chr4 22628198 C-T Hetero INTERGENIC
SBS Chr4 31767907 G-C Hetero INTRON
SBS Chr5 4847504 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 8783891 T-C Hetero INTERGENIC
SBS Chr5 19549769 G-T Homo INTERGENIC
SBS Chr5 24844685 G-C Hetero INTERGENIC
SBS Chr6 13658864 A-T Hetero INTERGENIC
SBS Chr6 15024790 C-T Hetero INTERGENIC
SBS Chr6 24975871 A-T Hetero INTERGENIC
SBS Chr7 8629322 A-G Hetero INTERGENIC
SBS Chr7 9221102 C-T Hetero INTRON
SBS Chr7 9818133 C-T Hetero INTERGENIC
SBS Chr7 10243908 A-C Hetero INTERGENIC
SBS Chr7 12592466 C-A Hetero INTERGENIC
SBS Chr7 13652011 C-T Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 3054300 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g034000
SBS Chr8 3054301 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g034000
SBS Chr8 7292035 G-A Hetero INTERGENIC
SBS Chr9 4565892 C-T Homo INTERGENIC
SBS Chr9 8279362 A-T Hetero INTERGENIC
SBS Chr9 8901009 A-G Hetero INTERGENIC
SBS Chr11 90970 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g000192
SBS Chr11 90971 T-A Homo SYNONYMOUS_CODING
SBS Chr11 11114996 G-A Homo INTERGENIC
SBS Chr12 19121634 T-C Hetero SPLICE_SITE_REGION

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 283001 310000 26999 2
Deletion Chr10 3197308 3197316 8
Deletion Chr9 3295018 3295023 5
Deletion Chr1 13684134 13684135 1
Deletion Chr3 14907398 14907400 2
Deletion Chr3 15706672 15706682 10
Deletion Chr3 16309394 16309401 7
Deletion Chr6 16786828 16786829 1 OsKitaake06g158400
Deletion Chr1 18091215 18091216 1
Deletion Chr10 18464537 18464542 5
Deletion Chr10 20709763 20709765 2 OsKitaake10g159300
Deletion Chr10 22196029 22196038 9 OsKitaake10g181000
Deletion Chr12 23003488 23003489 1
Deletion Chr5 27615001 27787000 171999 25
Deletion Chr5 29401543 29401545 2
Deletion Chr6 30270921 30270922 1
Deletion Chr1 34626483 34626486 3
Deletion Chr2 36131441 36131447 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35360528 35360531 2
Insertion Chr3 9084393 9084398 4
Insertion Chr4 2898788 2898791 2
Insertion Chr5 30236466 30236474 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14281916	G-A	Hetero	INTERGENIC
SBS	Chr1	29119959	G-C	Hetero	INTERGENIC
SBS	Chr2	13803269	G-T	Homo	INTERGENIC
SBS	Chr2	20714329	A-G	Hetero	INTERGENIC
SBS	Chr2	26882234	T-C	Homo	INTERGENIC
SBS	Chr2	28795824	C-T	Hetero	INTERGENIC
SBS	Chr3	24244207	C-T	Homo	INTERGENIC
SBS	Chr3	33801231	T-A	Homo	INTERGENIC
SBS	Chr4	9379527	C-G	Hetero	INTERGENIC
SBS	Chr4	22628198	C-T	Hetero	INTERGENIC
SBS	Chr4	31767907	G-C	Hetero	INTRON
SBS	Chr5	4847504	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	8783891	T-C	Hetero	INTERGENIC
SBS	Chr5	19549769	G-T	Homo	INTERGENIC
SBS	Chr5	24844685	G-C	Hetero	INTERGENIC
SBS	Chr6	13658864	A-T	Hetero	INTERGENIC
SBS	Chr6	15024790	C-T	Hetero	INTERGENIC
SBS	Chr6	24975871	A-T	Hetero	INTERGENIC
SBS	Chr7	8629322	A-G	Hetero	INTERGENIC
SBS	Chr7	9221102	C-T	Hetero	INTRON
SBS	Chr7	9818133	C-T	Hetero	INTERGENIC
SBS	Chr7	10243908	A-C	Hetero	INTERGENIC
SBS	Chr7	12592466	C-A	Hetero	INTERGENIC
SBS	Chr7	13652011	C-T	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	3054300	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g034000
SBS	Chr8	3054301	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g034000
SBS	Chr8	7292035	G-A	Hetero	INTERGENIC
SBS	Chr9	4565892	C-T	Homo	INTERGENIC
SBS	Chr9	8279362	A-T	Hetero	INTERGENIC
SBS	Chr9	8901009	A-G	Hetero	INTERGENIC
SBS	Chr11	90970	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g000192
SBS	Chr11	90971	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	11114996	G-A	Homo	INTERGENIC
SBS	Chr12	19121634	T-C	Hetero	SPLICE_SITE_REGION

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	283001	310000	26999	2
Deletion	Chr10	3197308	3197316	8
Deletion	Chr9	3295018	3295023	5
Deletion	Chr1	13684134	13684135	1
Deletion	Chr3	14907398	14907400	2
Deletion	Chr3	15706672	15706682	10
Deletion	Chr3	16309394	16309401	7
Deletion	Chr6	16786828	16786829	1	OsKitaake06g158400
Deletion	Chr1	18091215	18091216	1
Deletion	Chr10	18464537	18464542	5
Deletion	Chr10	20709763	20709765	2	OsKitaake10g159300
Deletion	Chr10	22196029	22196038	9	OsKitaake10g181000
Deletion	Chr12	23003488	23003489	1
Deletion	Chr5	27615001	27787000	171999	25
Deletion	Chr5	29401543	29401545	2
Deletion	Chr6	30270921	30270922	1
Deletion	Chr1	34626483	34626486	3
Deletion	Chr2	36131441	36131447	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes