Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-82 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-82 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8467990 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 26271584 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 31795439 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6512670 | C-G | Homo | INTRON | |
| SBS | Chr3 | 23191053 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16463598 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19652844 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 36004473 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 6125519 | T-C | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 10321763 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8076266 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 8076267 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 6499582 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10563075 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 11245467 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g100000 |
| SBS | Chr9 | 2829631 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 11305226 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 19181029 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4530266 | A-T | Homo | INTRON | |
| SBS | Chr11 | 24385621 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7637547 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19371140 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20491112 | G-C | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 6785620 | 6785622 | 2 | OsKitaake05g068400 |
| Deletion | Chr10 | 11331254 | 11331256 | 2 | |
| Deletion | Chr6 | 19842066 | 19842067 | 1 | OsKitaake06g178100 |
| Deletion | Chr10 | 21093001 | 21252000 | 158999 | 21 |
| Deletion | Chr10 | 21286001 | 21504000 | 217999 | 31 |
| Deletion | Chr6 | 22413249 | 22413253 | 4 | |
| Deletion | Chr3 | 29132300 | 29132302 | 2 | OsKitaake03g302800 |
| Deletion | Chr1 | 34160307 | 34160321 | 14 | |
| Deletion | Chr1 | 34428676 | 34428678 | 2 | |
| Deletion | Chr3 | 34517350 | 34517359 | 9 | |
| Deletion | Chr2 | 36385590 | 36385598 | 8 | |
| Deletion | Chr1 | 39431304 | 39431305 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 4690379 | 4690381 | 1 | |
| Insertion | Chr10 | 21368120 | 21368123 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 4827794 | 5121167 | OsKitaake11g064600 |
| Inversion | Chr11 | 4827798 | 5121170 | OsKitaake11g064600 |
| Inversion | Chr4 | 36232116 | 36340596 | |
| Inversion | Chr4 | 36232228 | 36340603 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 4028570 | Chr3 | 12728016 | OsKitaake03g171600 |
| Translocation | Chr7 | 4028904 | Chr3 | 12728012 | OsKitaake03g171600 |