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Mutant Information

Mutant Name	FN-84 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-84 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 598026 A-G Hetero INTRON
SBS Chr1 4899141 C-T Hetero INTERGENIC
SBS Chr1 13132048 C-T Homo INTERGENIC
SBS Chr1 14415294 G-A Homo STOP_GAINED OsKitaake01g164100
SBS Chr1 16178022 G-A Hetero INTERGENIC
SBS Chr1 22473024 T-C Homo INTRON
SBS Chr2 1945254 T-G Hetero INTRON
SBS Chr2 18955070 T-A Hetero INTERGENIC
SBS Chr3 10493187 C-A Homo UTR_5_PRIME
SBS Chr3 10493188 G-A Homo START_GAINED
SBS Chr3 18096252 G-C Hetero INTERGENIC
SBS Chr3 29434152 T-A Hetero UTR_3_PRIME
SBS Chr3 29497820 G-T Hetero INTERGENIC
SBS Chr4 31447609 A-T Hetero INTERGENIC
SBS Chr5 343131 A-T Hetero INTERGENIC
SBS Chr5 1216687 C-T Hetero INTERGENIC
SBS Chr5 26979813 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 30175469 T-G Hetero INTERGENIC
SBS Chr7 18307942 T-A Homo INTERGENIC
SBS Chr8 2061460 A-C Hetero INTRON
SBS Chr8 25887146 T-C Hetero INTERGENIC
SBS Chr9 8040621 G-A Hetero INTERGENIC
SBS Chr11 1346440 G-C Homo INTERGENIC
SBS Chr11 14082947 T-C Homo INTRON
SBS Chr11 14177536 A-G Homo NON_SYNONYMOUS_CODING OsKitaake11g118400
SBS Chr11 24524846 A-T Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1230043 1230048 5
Deletion Chr10 2892003 2892009 6
Deletion Chr9 5402001 5437000 34999
Deletion Chr8 7443325 7443415 90
Deletion Chr6 9025382 9025389 7
Deletion Chr9 10909166 10909174 8
Deletion Chr4 12299087 12299089 2 OsKitaake04g059700
Deletion Chr5 12393707 12393708 1
Deletion Chr5 12424107 12424108 1
Deletion Chr3 15165267 15165271 4
Deletion Chr1 15748097 15748111 14
Deletion Chr7 15991728 15991730 2 OsKitaake07g132300
Deletion Chr9 16097095 16097096 1
Deletion Chr10 16512532 16512782 250 OsKitaake10g112200
Deletion Chr11 16586013 16586017 4
Deletion Chr11 19964533 19964534 1
Deletion Chr8 20109562 20109564 2
Deletion Chr10 20908568 20908583 15
Deletion Chr3 23920515 23920883 368
Deletion Chr3 28946478 28946479 1
Deletion Chr3 31661362 31661365 3
Deletion Chr1 34107404 34107407 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3735830 3735833 2
Insertion Chr7 11037064 11037067 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 26819875 26956332 OsKitaake04g195600
Inversion Chr4 26819892 26956340 OsKitaake04g195600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	598026	A-G	Hetero	INTRON
SBS	Chr1	4899141	C-T	Hetero	INTERGENIC
SBS	Chr1	13132048	C-T	Homo	INTERGENIC
SBS	Chr1	14415294	G-A	Homo	STOP_GAINED	OsKitaake01g164100
SBS	Chr1	16178022	G-A	Hetero	INTERGENIC
SBS	Chr1	22473024	T-C	Homo	INTRON
SBS	Chr2	1945254	T-G	Hetero	INTRON
SBS	Chr2	18955070	T-A	Hetero	INTERGENIC
SBS	Chr3	10493187	C-A	Homo	UTR_5_PRIME
SBS	Chr3	10493188	G-A	Homo	START_GAINED
SBS	Chr3	18096252	G-C	Hetero	INTERGENIC
SBS	Chr3	29434152	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	29497820	G-T	Hetero	INTERGENIC
SBS	Chr4	31447609	A-T	Hetero	INTERGENIC
SBS	Chr5	343131	A-T	Hetero	INTERGENIC
SBS	Chr5	1216687	C-T	Hetero	INTERGENIC
SBS	Chr5	26979813	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	30175469	T-G	Hetero	INTERGENIC
SBS	Chr7	18307942	T-A	Homo	INTERGENIC
SBS	Chr8	2061460	A-C	Hetero	INTRON
SBS	Chr8	25887146	T-C	Hetero	INTERGENIC
SBS	Chr9	8040621	G-A	Hetero	INTERGENIC
SBS	Chr11	1346440	G-C	Homo	INTERGENIC
SBS	Chr11	14082947	T-C	Homo	INTRON
SBS	Chr11	14177536	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g118400
SBS	Chr11	24524846	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1230043	1230048	5
Deletion	Chr10	2892003	2892009	6
Deletion	Chr9	5402001	5437000	34999
Deletion	Chr8	7443325	7443415	90
Deletion	Chr6	9025382	9025389	7
Deletion	Chr9	10909166	10909174	8
Deletion	Chr4	12299087	12299089	2	OsKitaake04g059700
Deletion	Chr5	12393707	12393708	1
Deletion	Chr5	12424107	12424108	1
Deletion	Chr3	15165267	15165271	4
Deletion	Chr1	15748097	15748111	14
Deletion	Chr7	15991728	15991730	2	OsKitaake07g132300
Deletion	Chr9	16097095	16097096	1
Deletion	Chr10	16512532	16512782	250	OsKitaake10g112200
Deletion	Chr11	16586013	16586017	4
Deletion	Chr11	19964533	19964534	1
Deletion	Chr8	20109562	20109564	2
Deletion	Chr10	20908568	20908583	15
Deletion	Chr3	23920515	23920883	368
Deletion	Chr3	28946478	28946479	1
Deletion	Chr3	31661362	31661365	3
Deletion	Chr1	34107404	34107407	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26819875	26956332	OsKitaake04g195600
Inversion	Chr4	26819892	26956340	OsKitaake04g195600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes