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| Mutant Information |
|---|
| Mutant Name | FN-85 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-85 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 997607 | T-A | Homo | INTRON | |
| SBS | Chr1 | 997608 | C-A | Homo | INTRON | |
| SBS | Chr1 | 11739794 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 36542226 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36542227 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43524012 | G-A | Homo | INTRON | |
| SBS | Chr2 | 7227264 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 11623601 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 20931818 | G-A | Homo | INTRON | |
| SBS | Chr2 | 21315271 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 32684366 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g334900 |
| SBS | Chr3 | 6820173 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6908580 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16107056 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17751123 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g217800 |
| SBS | Chr3 | 19319515 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20758440 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 31545950 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 588779 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g006200 |
| SBS | Chr5 | 14656741 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20067412 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26941266 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 27204100 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g245900 |
| SBS | Chr6 | 20435896 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 4042712 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 5401309 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 6296683 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10371067 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8524931 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4156543 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 10676827 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 21932536 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23610871 | G-A | Homo | INTRON |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 8663771 | 8663772 | 1 | |
| Deletion | Chr1 | 9148892 | 9148894 | 2 | |
| Deletion | Chr4 | 12320841 | 12320845 | 4 | |
| Deletion | Chr10 | 15435931 | 15435940 | 9 | |
| Deletion | Chr10 | 16240633 | 16240634 | 1 | |
| Deletion | Chr5 | 19245421 | 19245607 | 186 | |
| Deletion | Chr3 | 22185172 | 22185173 | 1 | |
| Deletion | Chr3 | 22664333 | 22664335 | 2 | |
| Deletion | Chr10 | 23482473 | 23482475 | 2 | |
| Deletion | Chr1 | 25405459 | 25405461 | 2 | OsKitaake01g246200 |
| Deletion | Chr5 | 27360212 | 27360222 | 10 | |
| Deletion | Chr7 | 27414481 | 27414490 | 9 | |
| Deletion | Chr6 | 30833561 | 30833562 | 1 | |
| Deletion | Chr1 | 43492099 | 43492103 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 12909944 | 12909946 | 1 | |
| Insertion | Chr1 | 9692959 | 9692961 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 8232262 | 8580510 | OsKitaake07g089700 |
| Inversion | Chr7 | 8232265 | 8580522 | OsKitaake07g089700 |
| Inversion | Chr1 | 22209070 | 22307905 |