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Mutant Information

Mutant Name	FN-86 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-86 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10524532 A-G Homo INTERGENIC
SBS Chr1 20914924 A-T Homo INTERGENIC
SBS Chr1 20998143 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g205600
SBS Chr1 22104448 A-C Homo INTERGENIC
SBS Chr1 31282584 T-A Hetero INTERGENIC
SBS Chr1 41717035 A-G Hetero INTERGENIC
SBS Chr2 3598090 C-T Homo INTERGENIC
SBS Chr2 22788910 A-G Hetero INTERGENIC
SBS Chr3 16703744 G-A Homo INTERGENIC
SBS Chr3 25503356 G-A Hetero INTRON
SBS Chr4 4823300 G-T Hetero INTERGENIC
SBS Chr4 31513583 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g247800
SBS Chr5 1913522 G-T Homo INTERGENIC
SBS Chr6 77220 G-C Hetero INTERGENIC
SBS Chr6 29215332 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g270300
SBS Chr8 404973 T-A Hetero INTERGENIC
SBS Chr9 4785186 G-C Homo INTERGENIC
SBS Chr10 12139161 T-G Hetero INTERGENIC
SBS Chr11 1026445 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 5714953 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g070100
SBS Chr11 15967064 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 7363921 7363923 2
Deletion Chr9 12153966 12154100 134 OsKitaake09g078700
Deletion Chr1 14520053 14520057 4
Deletion Chr3 16528056 16528058 2
Deletion Chr7 17262283 17262284 1
Deletion Chr1 18617985 18617987 2
Deletion Chr1 21894285 21894287 2
Deletion Chr6 22918555 22918556 1
Deletion Chr8 24824288 24824290 2
Deletion Chr6 29527001 29544000 16999 5
Deletion Chr1 31737001 31756000 18999 3
Deletion Chr1 35813001 35839000 25999 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 17108772 17108780 7
Insertion Chr5 12464015 12464017 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10524532	A-G	Homo	INTERGENIC
SBS	Chr1	20914924	A-T	Homo	INTERGENIC
SBS	Chr1	20998143	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g205600
SBS	Chr1	22104448	A-C	Homo	INTERGENIC
SBS	Chr1	31282584	T-A	Hetero	INTERGENIC
SBS	Chr1	41717035	A-G	Hetero	INTERGENIC
SBS	Chr2	3598090	C-T	Homo	INTERGENIC
SBS	Chr2	22788910	A-G	Hetero	INTERGENIC
SBS	Chr3	16703744	G-A	Homo	INTERGENIC
SBS	Chr3	25503356	G-A	Hetero	INTRON
SBS	Chr4	4823300	G-T	Hetero	INTERGENIC
SBS	Chr4	31513583	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g247800
SBS	Chr5	1913522	G-T	Homo	INTERGENIC
SBS	Chr6	77220	G-C	Hetero	INTERGENIC
SBS	Chr6	29215332	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g270300
SBS	Chr8	404973	T-A	Hetero	INTERGENIC
SBS	Chr9	4785186	G-C	Homo	INTERGENIC
SBS	Chr10	12139161	T-G	Hetero	INTERGENIC
SBS	Chr11	1026445	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	5714953	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g070100
SBS	Chr11	15967064	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	7363921	7363923	2
Deletion	Chr9	12153966	12154100	134	OsKitaake09g078700
Deletion	Chr1	14520053	14520057	4
Deletion	Chr3	16528056	16528058	2
Deletion	Chr7	17262283	17262284	1
Deletion	Chr1	18617985	18617987	2
Deletion	Chr1	21894285	21894287	2
Deletion	Chr6	22918555	22918556	1
Deletion	Chr8	24824288	24824290	2
Deletion	Chr6	29527001	29544000	16999	5
Deletion	Chr1	31737001	31756000	18999	3
Deletion	Chr1	35813001	35839000	25999	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes