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| Mutant Information |
|---|
| Mutant Name | FN-87 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-87 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34834133 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35894515 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 36025016 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 499155 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 12723440 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 20831829 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 3310027 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 17134430 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24893509 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 27157841 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 5855609 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 5855610 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 8061861 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 16473621 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 10325622 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4424763 | G-A | Homo | INTRON | |
| SBS | Chr7 | 6420979 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 12575229 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g112300 |
| SBS | Chr7 | 14279599 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20621305 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 27312422 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 5665249 | A-C | Hetero | INTRON | |
| SBS | Chr8 | 6755217 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20658569 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1158234 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 4091497 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5843504 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 24057239 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 7161687 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 7843544 | G-A | Homo | START_GAINED | |
| SBS | Chr11 | 18362121 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 23340735 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27477373 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1134678 | A-C | Homo | INTRON | |
| SBS | Chr12 | 7710859 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 7902292 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 10612521 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15554334 | G-A | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 9001 | 111000 | 101999 | 12 |
| Deletion | Chr2 | 214498 | 214500 | 2 | |
| Deletion | Chr6 | 4378822 | 4378823 | 1 | |
| Deletion | Chr8 | 5015397 | 5015399 | 2 | |
| Deletion | Chr12 | 6379312 | 6379321 | 9 | OsKitaake12g073600 |
| Deletion | Chr4 | 6442830 | 6442831 | 1 | |
| Deletion | Chr5 | 6933169 | 6933170 | 1 | |
| Deletion | Chr9 | 8310367 | 8310370 | 3 | |
| Deletion | Chr6 | 11848622 | 11848623 | 1 | |
| Deletion | Chr9 | 13618873 | 13618874 | 1 | |
| Deletion | Chr2 | 14179032 | 14179051 | 19 | |
| Deletion | Chr10 | 16824058 | 16824059 | 1 | |
| Deletion | Chr2 | 21843763 | 21843767 | 4 | |
| Deletion | Chr12 | 23376883 | 23376889 | 6 | |
| Deletion | Chr6 | 24308101 | 24308102 | 1 | |
| Deletion | Chr12 | 24597538 | 24597539 | 1 | |
| Deletion | Chr2 | 35911726 | 35911728 | 2 | |
| Deletion | Chr3 | 36699350 | 36699358 | 8 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 29891140 | 29891143 | 2 |