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| Mutant Information |
|---|
| Mutant Name | FN-88 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-88 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18353174 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 20750108 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 30340459 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g299200 |
| SBS | Chr1 | 34023922 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g349800 |
| SBS | Chr2 | 4033708 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6287845 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g085000 |
| SBS | Chr2 | 13307988 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 20823586 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 16893506 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14183077 | A-C | Homo | INTRON | |
| SBS | Chr5 | 16251870 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 20776782 | T-G | Hetero | INTRON | |
| SBS | Chr5 | 27676514 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 27676516 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 387756 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 2344107 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 10494477 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17615062 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 19885993 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 5165777 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17274750 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14877811 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 1666980 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 16899288 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 16899289 | G-T | Hetero | UTR_3_PRIME |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 86160 | 86161 | 1 | |
| Deletion | Chr4 | 3463818 | 3463819 | 1 | |
| Deletion | Chr8 | 6527834 | 6527835 | 1 | |
| Deletion | Chr4 | 9316720 | 9316721 | 1 | |
| Deletion | Chr8 | 9486080 | 9486089 | 9 | |
| Deletion | Chr8 | 13924848 | 13924849 | 1 | |
| Deletion | Chr1 | 13956728 | 13956729 | 1 | |
| Deletion | Chr4 | 16431282 | 16431419 | 137 | |
| Deletion | Chr12 | 21683559 | 21683560 | 1 | |
| Deletion | Chr7 | 25406982 | 25407303 | 321 | |
| Deletion | Chr12 | 26505219 | 26505221 | 2 | |
| Deletion | Chr2 | 28880001 | 28889000 | 8999 | OsKitaake02g290300 |
| Deletion | Chr2 | 29622001 | 29787000 | 164999 | 17 |
| Deletion | Chr1 | 42062363 | 42062364 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 15986072 | 15986075 | 2 | |
| Insertion | Chr10 | 8499638 | 8499641 | 2 | |
| Insertion | Chr12 | 17238951 | 17238954 | 2 | |
| Insertion | Chr4 | 10496893 | 10496945 | 51 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 5838735 | 6232155 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 10925958 | Chr2 | 28292354 | OsKitaake06g121600 |
| Translocation | Chr6 | 10938130 | Chr2 | 29787253 | OsKitaake06g121700 |
| Translocation | Chr10 | 13260798 | Chr4 | 9728838 | |
| Translocation | Chr12 | 22333226 | Chr2 | 29618884 | OsKitaake12g175666 |
| Translocation | Chr12 | 22334034 | Chr2 | 29787257 | OsKitaake12g175666 |