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| Mutant Information |
|---|
| Mutant Name | FN-89 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-89 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26609025 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 441107 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g006200 |
| SBS | Chr2 | 8924800 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 14826577 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 20230839 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 24135017 | C-G | Homo | INTRON | |
| SBS | Chr2 | 27154616 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 27285218 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g281000 |
| SBS | Chr4 | 29176769 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 8401242 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22978578 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 24890073 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 27605515 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 20060395 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 20691565 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 25459509 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26043675 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 26808137 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 5540638 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 16209064 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 19707923 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10215556 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15681837 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5784682 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5680885 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11089068 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 860553 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 1494045 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19960100 | G-T | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 281427 | 281438 | 11 | |
| Deletion | Chr6 | 1652781 | 1652782 | 1 | |
| Deletion | Chr7 | 4649935 | 4649937 | 2 | |
| Deletion | Chr9 | 6324687 | 6324688 | 1 | OsKitaake09g036700 |
| Deletion | Chr1 | 6507392 | 6507393 | 1 | |
| Deletion | Chr4 | 7012328 | 7012330 | 2 | |
| Deletion | Chr12 | 8772059 | 8772060 | 1 | |
| Deletion | Chr2 | 8945121 | 8945122 | 1 | |
| Deletion | Chr2 | 9017504 | 9017505 | 1 | |
| Deletion | Chr5 | 10928001 | 10937000 | 8999 | |
| Deletion | Chr7 | 13721001 | 13730000 | 8999 | |
| Deletion | Chr9 | 21243820 | 21243822 | 2 | |
| Deletion | Chr3 | 22065138 | 22065140 | 2 | |
| Deletion | Chr2 | 23465498 | 23465499 | 1 | |
| Deletion | Chr10 | 24017786 | 24017795 | 9 | |
| Deletion | Chr2 | 24281400 | 24281415 | 15 | |
| Deletion | Chr3 | 27066001 | 27106000 | 39999 | 5 |
| Deletion | Chr5 | 29461455 | 29461457 | 2 | |
| Deletion | Chr2 | 29994744 | 29994764 | 20 | OsKitaake02g304500 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 32291189 | 32291191 | 1 | |
| Insertion | Chr7 | 8498072 | 8498074 | 1 | |
| Insertion | Chr10 | 9205970 | 9205972 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 32239418 | 32328461 | |
| Inversion | Chr1 | 32239422 | 32328462 |