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| Mutant Information |
|---|
| Mutant Name | FN-90 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-90 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8653799 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16357989 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g175833 |
| SBS | Chr1 | 35267966 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1825102 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 1825103 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 2947409 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15353407 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34818016 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 635994 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15295744 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 29155844 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 31498886 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34121085 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9974533 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 13905012 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18865948 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20150841 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13861003 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 16904991 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 19503557 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 6619935 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7048903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22693071 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25490771 | C-A | Hetero | STOP_GAINED | OsKitaake11g205400 |
| SBS | Chr11 | 27388967 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5632816 | C-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 791709 | 791720 | 11 | |
| Deletion | Chr6 | 1212456 | 1212461 | 5 | |
| Deletion | Chr6 | 1518530 | 1518541 | 11 | |
| Deletion | Chr2 | 2210286 | 2210287 | 1 | |
| Deletion | Chr11 | 7020898 | 7020910 | 12 | OsKitaake11g080400 |
| Deletion | Chr2 | 8395860 | 8395861 | 1 | OsKitaake02g106600 |
| Deletion | Chr9 | 13303877 | 13303878 | 1 | |
| Deletion | Chr1 | 14181491 | 14181492 | 1 | OsKitaake01g162400 |
| Deletion | Chr7 | 22504001 | 22517000 | 12999 | 5 |
| Deletion | Chr4 | 27917686 | 27917693 | 7 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 3416809 | 3416812 | 2 | |
| Insertion | Chr7 | 734216 | 734219 | 2 | |
| Insertion | Chr5 | 21767326 | 21767332 | 5 | |
| Insertion | Chr12 | 11658594 | 11658596 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1676609 | 1777790 | OsKitaake08g227600 |
| Inversion | Chr7 | 26689129 | 27405770 | |
| Inversion | Chr7 | 26689145 | 27405776 |