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Mutant Information

Mutant Name	FN-91 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-91 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5659305 T-A Hetero INTRON
SBS Chr3 3970004 G-A Hetero INTERGENIC
SBS Chr3 10907515 A-G Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr4 20280824 G-A Hetero INTERGENIC
SBS Chr4 27608714 T-C Homo INTERGENIC
SBS Chr5 13057383 T-C Hetero INTERGENIC
SBS Chr5 26472645 A-T Homo NON_SYNONYMOUS_CODING OsKitaake05g234800
SBS Chr5 26472648 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g234800
SBS Chr6 7109392 G-A Homo INTERGENIC
SBS Chr6 24976489 A-G Hetero INTERGENIC
SBS Chr7 6299541 G-A Hetero INTERGENIC
SBS Chr7 29593123 G-A Homo INTERGENIC
SBS Chr8 2443803 T-G Hetero INTERGENIC
SBS Chr8 5144515 G-T Hetero INTERGENIC
SBS Chr11 21641316 T-A Homo INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC
SBS Chr12 19848045 T-C Homo UTR_5_PRIME

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 123031 123032 1
Deletion Chr8 1194461 1194466 5
Deletion Chr11 1406001 1514000 107999 22
Deletion Chr11 2511725 2511727 2
Deletion Chr1 4325247 4325248 1 OsKitaake01g057600
Deletion Chr8 4889806 4890174 368
Deletion Chr4 5735746 5735752 6
Deletion Chr12 6713001 6758000 44999 OsKitaake12g076900
Deletion Chr11 7811001 7817000 5999
Deletion Chr2 8353904 8353988 84
Deletion Chr12 8900280 8900282 2
Deletion Chr2 13817172 13817367 195
Deletion Chr9 15818001 15818003 2
Deletion Chr1 16950063 16950065 2
Deletion Chr6 17018044 17018056 12
Deletion Chr10 19470966 19470969 3 OsKitaake10g142800
Deletion Chr12 19600589 19600591 2
Deletion Chr10 20038251 20038252 1
Deletion Chr5 30018135 30018140 5
Deletion Chr3 35412227 35412228 1 OsKitaake03g388600
Deletion Chr1 36434558 36434566 8
Deletion Chr1 38316938 38316939 1 OsKitaake01g408400

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 20248201 20248205 3
Insertion Chr2 13850924 13850926 1
Insertion Chr3 26310606 26310609 2
Insertion Chr11 25162046 25162048 1
Insertion Chr12 11707370 11707373 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6788124 6791852

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5659305	T-A	Hetero	INTRON
SBS	Chr3	3970004	G-A	Hetero	INTERGENIC
SBS	Chr3	10907515	A-G	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr4	20280824	G-A	Hetero	INTERGENIC
SBS	Chr4	27608714	T-C	Homo	INTERGENIC
SBS	Chr5	13057383	T-C	Hetero	INTERGENIC
SBS	Chr5	26472645	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g234800
SBS	Chr5	26472648	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g234800
SBS	Chr6	7109392	G-A	Homo	INTERGENIC
SBS	Chr6	24976489	A-G	Hetero	INTERGENIC
SBS	Chr7	6299541	G-A	Hetero	INTERGENIC
SBS	Chr7	29593123	G-A	Homo	INTERGENIC
SBS	Chr8	2443803	T-G	Hetero	INTERGENIC
SBS	Chr8	5144515	G-T	Hetero	INTERGENIC
SBS	Chr11	21641316	T-A	Homo	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC
SBS	Chr12	19848045	T-C	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	123031	123032	1
Deletion	Chr8	1194461	1194466	5
Deletion	Chr11	1406001	1514000	107999	22
Deletion	Chr11	2511725	2511727	2
Deletion	Chr1	4325247	4325248	1	OsKitaake01g057600
Deletion	Chr8	4889806	4890174	368
Deletion	Chr4	5735746	5735752	6
Deletion	Chr12	6713001	6758000	44999	OsKitaake12g076900
Deletion	Chr11	7811001	7817000	5999
Deletion	Chr2	8353904	8353988	84
Deletion	Chr12	8900280	8900282	2
Deletion	Chr2	13817172	13817367	195
Deletion	Chr9	15818001	15818003	2
Deletion	Chr1	16950063	16950065	2
Deletion	Chr6	17018044	17018056	12
Deletion	Chr10	19470966	19470969	3	OsKitaake10g142800
Deletion	Chr12	19600589	19600591	2
Deletion	Chr10	20038251	20038252	1
Deletion	Chr5	30018135	30018140	5
Deletion	Chr3	35412227	35412228	1	OsKitaake03g388600
Deletion	Chr1	36434558	36434566	8
Deletion	Chr1	38316938	38316939	1	OsKitaake01g408400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6788124	6791852

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes