Search Kitaake

Mutant Information

Mutant Name	FN-92 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-92 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9556834 C-T Homo INTERGENIC
SBS Chr1 9958844 A-G Hetero INTRON
SBS Chr1 12423460 G-C Hetero INTRON
SBS Chr1 34566109 G-C Homo INTERGENIC
SBS Chr1 36615691 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g389100
SBS Chr1 43236676 G-C Homo INTERGENIC
SBS Chr1 43236677 C-A Homo INTERGENIC
SBS Chr2 8957844 T-C Homo INTRON
SBS Chr3 2827945 C-G Homo INTERGENIC
SBS Chr3 5197390 G-A Homo INTERGENIC
SBS Chr3 5615352 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g079700
SBS Chr3 31289741 C-T Hetero INTERGENIC
SBS Chr4 20293120 C-G Hetero INTERGENIC
SBS Chr4 28338878 C-T Hetero INTERGENIC
SBS Chr4 30463945 A-G Hetero INTERGENIC
SBS Chr4 31530485 G-A Hetero INTERGENIC
SBS Chr4 35957144 G-A Hetero INTERGENIC
SBS Chr5 22280502 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g182100
SBS Chr6 3776809 G-A Hetero INTERGENIC
SBS Chr6 6646893 C-T Hetero INTRON
SBS Chr6 9950147 T-G Hetero UTR_3_PRIME
SBS Chr6 11959520 T-A Hetero INTRON
SBS Chr6 11959521 T-A Hetero INTRON
SBS Chr7 29486677 A-T Hetero SPLICE_SITE_REGION
SBS Chr8 5488973 G-T Hetero INTERGENIC
SBS Chr8 6786957 C-A Homo INTERGENIC
SBS Chr8 7497381 G-T Homo INTERGENIC
SBS Chr9 9454060 G-A Hetero INTRON
SBS Chr10 951198 T-C Hetero INTERGENIC
SBS Chr10 12026531 C-T Homo INTERGENIC
SBS Chr11 13354256 A-G Hetero INTERGENIC
SBS Chr11 19819813 G-A Hetero INTERGENIC
SBS Chr11 21304285 C-G Homo INTERGENIC
SBS Chr12 18226051 C-A Homo SYNONYMOUS_CODING

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1462658 1462664 6
Deletion Chr3 7566407 7566409 2
Deletion Chr9 7681598 7681708 110
Deletion Chr6 8186757 8186758 1
Deletion Chr1 10593001 10643000 49999 2
Deletion Chr6 10701586 10701595 9
Deletion Chr6 14657001 14853000 195999 8
Deletion Chr6 14862001 15235000 372999 14
Deletion Chr6 15242001 15354000 111999 4
Deletion Chr7 16972001 17028000 55999 5
Deletion Chr7 17539157 17539160 3
Deletion Chr6 28353043 28353164 121
Deletion Chr1 30105783 30105785 2 OsKitaake01g296400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 24005392 24005395 2
Insertion Chr1 14631562 14631614 51
Insertion Chr5 30012903 30012905 1
Insertion Chr6 6079 6081 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 19763532 19763857
Inversion Chr6 22735377 22751986
Inversion Chr6 22735390 22751988
Inversion Chr8 28365946 28686702 OsKitaake08g239600
Inversion Chr8 28365951 28688837 OsKitaake08g239600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9556834	C-T	Homo	INTERGENIC
SBS	Chr1	9958844	A-G	Hetero	INTRON
SBS	Chr1	12423460	G-C	Hetero	INTRON
SBS	Chr1	34566109	G-C	Homo	INTERGENIC
SBS	Chr1	36615691	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g389100
SBS	Chr1	43236676	G-C	Homo	INTERGENIC
SBS	Chr1	43236677	C-A	Homo	INTERGENIC
SBS	Chr2	8957844	T-C	Homo	INTRON
SBS	Chr3	2827945	C-G	Homo	INTERGENIC
SBS	Chr3	5197390	G-A	Homo	INTERGENIC
SBS	Chr3	5615352	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g079700
SBS	Chr3	31289741	C-T	Hetero	INTERGENIC
SBS	Chr4	20293120	C-G	Hetero	INTERGENIC
SBS	Chr4	28338878	C-T	Hetero	INTERGENIC
SBS	Chr4	30463945	A-G	Hetero	INTERGENIC
SBS	Chr4	31530485	G-A	Hetero	INTERGENIC
SBS	Chr4	35957144	G-A	Hetero	INTERGENIC
SBS	Chr5	22280502	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g182100
SBS	Chr6	3776809	G-A	Hetero	INTERGENIC
SBS	Chr6	6646893	C-T	Hetero	INTRON
SBS	Chr6	9950147	T-G	Hetero	UTR_3_PRIME
SBS	Chr6	11959520	T-A	Hetero	INTRON
SBS	Chr6	11959521	T-A	Hetero	INTRON
SBS	Chr7	29486677	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr8	5488973	G-T	Hetero	INTERGENIC
SBS	Chr8	6786957	C-A	Homo	INTERGENIC
SBS	Chr8	7497381	G-T	Homo	INTERGENIC
SBS	Chr9	9454060	G-A	Hetero	INTRON
SBS	Chr10	951198	T-C	Hetero	INTERGENIC
SBS	Chr10	12026531	C-T	Homo	INTERGENIC
SBS	Chr11	13354256	A-G	Hetero	INTERGENIC
SBS	Chr11	19819813	G-A	Hetero	INTERGENIC
SBS	Chr11	21304285	C-G	Homo	INTERGENIC
SBS	Chr12	18226051	C-A	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1462658	1462664	6
Deletion	Chr3	7566407	7566409	2
Deletion	Chr9	7681598	7681708	110
Deletion	Chr6	8186757	8186758	1
Deletion	Chr1	10593001	10643000	49999	2
Deletion	Chr6	10701586	10701595	9
Deletion	Chr6	14657001	14853000	195999	8
Deletion	Chr6	14862001	15235000	372999	14
Deletion	Chr6	15242001	15354000	111999	4
Deletion	Chr7	16972001	17028000	55999	5
Deletion	Chr7	17539157	17539160	3
Deletion	Chr6	28353043	28353164	121
Deletion	Chr1	30105783	30105785	2	OsKitaake01g296400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19763532	19763857
Inversion	Chr6	22735377	22751986
Inversion	Chr6	22735390	22751988
Inversion	Chr8	28365946	28686702	OsKitaake08g239600
Inversion	Chr8	28365951	28688837	OsKitaake08g239600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes