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Mutant Information

Mutant Name	FN-93 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-93 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3561753 T-G Hetero INTERGENIC
SBS Chr1 11689875 C-T Hetero INTERGENIC
SBS Chr1 14029318 C-A Homo INTERGENIC
SBS Chr1 18989570 A-T Homo INTRON
SBS Chr1 18989571 C-T Homo INTRON
SBS Chr1 29064767 A-C Homo INTRON
SBS Chr1 37554334 G-A Hetero INTERGENIC
SBS Chr1 37582393 T-C Hetero INTERGENIC
SBS Chr2 3236894 G-A Hetero INTRON
SBS Chr2 5799075 A-G Homo INTRON
SBS Chr3 10650650 C-T Hetero INTERGENIC
SBS Chr3 11616749 A-T Hetero INTERGENIC
SBS Chr3 19351506 T-C Homo INTERGENIC
SBS Chr3 33626553 T-A Homo INTERGENIC
SBS Chr4 218095 C-T Hetero INTERGENIC
SBS Chr4 218096 C-T Hetero INTERGENIC
SBS Chr4 476656 A-T Hetero INTRON
SBS Chr4 2044927 G-A Hetero INTERGENIC
SBS Chr4 19671691 A-C Hetero UTR_5_PRIME
SBS Chr4 27737452 T-C Homo INTERGENIC
SBS Chr5 12170535 C-T Hetero INTERGENIC
SBS Chr5 13213792 C-A Hetero INTERGENIC
SBS Chr5 15542985 G-A Hetero INTERGENIC
SBS Chr5 19340134 G-A Hetero INTERGENIC
SBS Chr5 26565464 T-C Homo INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr6 4844890 G-A Homo INTERGENIC
SBS Chr6 14765540 G-A Homo INTERGENIC
SBS Chr6 20870890 C-T Homo INTERGENIC
SBS Chr7 18792417 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g153000
SBS Chr7 23016040 C-T Hetero INTERGENIC
SBS Chr9 19734419 A-T Hetero INTRON
SBS Chr10 5540106 T-A Hetero INTERGENIC
SBS Chr10 8825585 A-G Hetero INTERGENIC
SBS Chr10 15165844 T-G Hetero INTERGENIC
SBS Chr11 1749576 G-A Hetero INTERGENIC
SBS Chr11 10717274 T-A Hetero INTERGENIC
SBS Chr11 14537669 C-A Hetero INTRON
SBS Chr11 26964939 G-A Hetero INTERGENIC
SBS Chr12 9862529 A-G Homo INTERGENIC
SBS Chr12 19648087 T-C Hetero UTR_3_PRIME

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4554048 4554058 10
Deletion Chr4 4641861 4641862 1
Deletion Chr12 4887267 4887270 3
Deletion Chr2 5800214 5800217 3
Deletion Chr9 6907079 6907083 4
Deletion Chr9 7389702 7389703 1
Deletion Chr12 8327979 8327981 2
Deletion Chr9 8739255 8739273 18
Deletion Chr8 10634117 10634131 14
Deletion Chr8 11272069 11272070 1
Deletion Chr4 12263372 12263379 7
Deletion Chr3 17958802 17958806 4
Deletion Chr5 19440757 19440758 1
Deletion Chr2 21715841 21715845 4 OsKitaake02g210800
Deletion Chr10 21889001 22031000 141999 18
Deletion Chr3 22071306 22071307 1
Deletion Chr7 25228421 25228430 9 OsKitaake07g227800
Deletion Chr3 28035705 28035706 1
Deletion Chr11 28583267 28583270 3
Deletion Chr4 33347679 33347685 6
Deletion Chr2 35930831 35930834 3
Deletion Chr4 36551192 36551194 2
Deletion Chr1 42792847 42792856 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2137582 2137584 1
Insertion Chr5 7207891 7207896 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 17706436 17706582

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 6470205 Chr2 30208750 OsKitaake02g307400
Translocation Chr10 13779142 Chr2 3218126
Translocation Chr10 13779155 Chr2 3218130

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3561753	T-G	Hetero	INTERGENIC
SBS	Chr1	11689875	C-T	Hetero	INTERGENIC
SBS	Chr1	14029318	C-A	Homo	INTERGENIC
SBS	Chr1	18989570	A-T	Homo	INTRON
SBS	Chr1	18989571	C-T	Homo	INTRON
SBS	Chr1	29064767	A-C	Homo	INTRON
SBS	Chr1	37554334	G-A	Hetero	INTERGENIC
SBS	Chr1	37582393	T-C	Hetero	INTERGENIC
SBS	Chr2	3236894	G-A	Hetero	INTRON
SBS	Chr2	5799075	A-G	Homo	INTRON
SBS	Chr3	10650650	C-T	Hetero	INTERGENIC
SBS	Chr3	11616749	A-T	Hetero	INTERGENIC
SBS	Chr3	19351506	T-C	Homo	INTERGENIC
SBS	Chr3	33626553	T-A	Homo	INTERGENIC
SBS	Chr4	218095	C-T	Hetero	INTERGENIC
SBS	Chr4	218096	C-T	Hetero	INTERGENIC
SBS	Chr4	476656	A-T	Hetero	INTRON
SBS	Chr4	2044927	G-A	Hetero	INTERGENIC
SBS	Chr4	19671691	A-C	Hetero	UTR_5_PRIME
SBS	Chr4	27737452	T-C	Homo	INTERGENIC
SBS	Chr5	12170535	C-T	Hetero	INTERGENIC
SBS	Chr5	13213792	C-A	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Hetero	INTERGENIC
SBS	Chr5	19340134	G-A	Hetero	INTERGENIC
SBS	Chr5	26565464	T-C	Homo	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	4844890	G-A	Homo	INTERGENIC
SBS	Chr6	14765540	G-A	Homo	INTERGENIC
SBS	Chr6	20870890	C-T	Homo	INTERGENIC
SBS	Chr7	18792417	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g153000
SBS	Chr7	23016040	C-T	Hetero	INTERGENIC
SBS	Chr9	19734419	A-T	Hetero	INTRON
SBS	Chr10	5540106	T-A	Hetero	INTERGENIC
SBS	Chr10	8825585	A-G	Hetero	INTERGENIC
SBS	Chr10	15165844	T-G	Hetero	INTERGENIC
SBS	Chr11	1749576	G-A	Hetero	INTERGENIC
SBS	Chr11	10717274	T-A	Hetero	INTERGENIC
SBS	Chr11	14537669	C-A	Hetero	INTRON
SBS	Chr11	26964939	G-A	Hetero	INTERGENIC
SBS	Chr12	9862529	A-G	Homo	INTERGENIC
SBS	Chr12	19648087	T-C	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4554048	4554058	10
Deletion	Chr4	4641861	4641862	1
Deletion	Chr12	4887267	4887270	3
Deletion	Chr2	5800214	5800217	3
Deletion	Chr9	6907079	6907083	4
Deletion	Chr9	7389702	7389703	1
Deletion	Chr12	8327979	8327981	2
Deletion	Chr9	8739255	8739273	18
Deletion	Chr8	10634117	10634131	14
Deletion	Chr8	11272069	11272070	1
Deletion	Chr4	12263372	12263379	7
Deletion	Chr3	17958802	17958806	4
Deletion	Chr5	19440757	19440758	1
Deletion	Chr2	21715841	21715845	4	OsKitaake02g210800
Deletion	Chr10	21889001	22031000	141999	18
Deletion	Chr3	22071306	22071307	1
Deletion	Chr7	25228421	25228430	9	OsKitaake07g227800
Deletion	Chr3	28035705	28035706	1
Deletion	Chr11	28583267	28583270	3
Deletion	Chr4	33347679	33347685	6
Deletion	Chr2	35930831	35930834	3
Deletion	Chr4	36551192	36551194	2
Deletion	Chr1	42792847	42792856	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	17706436	17706582

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes