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Mutant Information

Mutant Name	FN-94 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-94 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15470681 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g169200
SBS Chr1 29684354 T-A Homo UTR_3_PRIME
SBS Chr1 29684362 G-A Homo UTR_3_PRIME
SBS Chr1 38736669 T-A Hetero INTERGENIC
SBS Chr2 16287953 A-G Hetero INTERGENIC
SBS Chr2 23711431 T-C Homo INTRON
SBS Chr3 13825713 G-A Homo SYNONYMOUS_CODING
SBS Chr3 15249835 T-A Hetero INTERGENIC
SBS Chr4 8670119 A-T Hetero INTERGENIC
SBS Chr4 14436237 C-G Homo INTERGENIC
SBS Chr4 23228820 G-A Hetero INTERGENIC
SBS Chr4 26701908 G-T Hetero INTERGENIC
SBS Chr4 33507229 G-A Hetero INTERGENIC
SBS Chr5 1232945 C-T Hetero INTERGENIC
SBS Chr5 12573370 A-T Hetero INTERGENIC
SBS Chr5 14625863 G-A Hetero INTERGENIC
SBS Chr6 2738193 A-T Hetero INTRON
SBS Chr6 7690142 G-A Hetero INTERGENIC
SBS Chr7 14845390 G-A Hetero INTERGENIC
SBS Chr8 10820042 C-T Homo INTERGENIC
SBS Chr8 27377684 T-A Hetero INTERGENIC
SBS Chr8 27381609 A-T Hetero INTRON
SBS Chr10 6762903 G-A Homo INTERGENIC
SBS Chr11 1085523 C-A Hetero INTRON
SBS Chr11 9407094 T-A Hetero INTRON
SBS Chr11 9407116 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 15742257 G-T Hetero INTERGENIC
SBS Chr11 15742258 A-T Hetero INTERGENIC
SBS Chr11 27911042 T-C Homo INTERGENIC
SBS Chr11 28623223 G-T Homo UTR_5_PRIME
SBS Chr12 8154924 G-T Hetero INTERGENIC
SBS Chr12 8372676 A-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 226547 226549 2 OsKitaake06g001200
Deletion Chr8 1364660 1364661 1
Deletion Chr1 3048718 3048721 3
Deletion Chr3 3894528 3894545 17
Deletion Chr12 4277095 4277097 2
Deletion Chr4 5096564 5096583 19
Deletion Chr1 5354818 5354821 3 OsKitaake01g069500
Deletion Chr2 7511371 7511374 3
Deletion Chr10 7795148 7795149 1
Deletion Chr10 7795380 7795389 9
Deletion Chr12 10844789 10844796 7
Deletion Chr12 11474888 11474893 5
Deletion Chr5 13887659 13887664 5
Deletion Chr1 16288253 16288258 5
Deletion Chr7 16436053 16436057 4
Deletion Chr12 16750923 16750943 20
Deletion Chr5 19304770 19304775 5
Deletion Chr5 20846048 20846056 8
Deletion Chr7 20958491 20958492 1
Deletion Chr7 21663776 21663788 12
Deletion Chr4 22580289 22580293 4
Deletion Chr2 26013782 26013791 9
Deletion Chr4 28759909 28759912 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2183401 2183404 2
Insertion Chr4 19046314 19046317 2
Insertion Chr4 19570406 19570412 5

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 10004091 10013068 OsKitaake04g053700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15470681	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g169200
SBS	Chr1	29684354	T-A	Homo	UTR_3_PRIME
SBS	Chr1	29684362	G-A	Homo	UTR_3_PRIME
SBS	Chr1	38736669	T-A	Hetero	INTERGENIC
SBS	Chr2	16287953	A-G	Hetero	INTERGENIC
SBS	Chr2	23711431	T-C	Homo	INTRON
SBS	Chr3	13825713	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	15249835	T-A	Hetero	INTERGENIC
SBS	Chr4	8670119	A-T	Hetero	INTERGENIC
SBS	Chr4	14436237	C-G	Homo	INTERGENIC
SBS	Chr4	23228820	G-A	Hetero	INTERGENIC
SBS	Chr4	26701908	G-T	Hetero	INTERGENIC
SBS	Chr4	33507229	G-A	Hetero	INTERGENIC
SBS	Chr5	1232945	C-T	Hetero	INTERGENIC
SBS	Chr5	12573370	A-T	Hetero	INTERGENIC
SBS	Chr5	14625863	G-A	Hetero	INTERGENIC
SBS	Chr6	2738193	A-T	Hetero	INTRON
SBS	Chr6	7690142	G-A	Hetero	INTERGENIC
SBS	Chr7	14845390	G-A	Hetero	INTERGENIC
SBS	Chr8	10820042	C-T	Homo	INTERGENIC
SBS	Chr8	27377684	T-A	Hetero	INTERGENIC
SBS	Chr8	27381609	A-T	Hetero	INTRON
SBS	Chr10	6762903	G-A	Homo	INTERGENIC
SBS	Chr11	1085523	C-A	Hetero	INTRON
SBS	Chr11	9407094	T-A	Hetero	INTRON
SBS	Chr11	9407116	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	15742257	G-T	Hetero	INTERGENIC
SBS	Chr11	15742258	A-T	Hetero	INTERGENIC
SBS	Chr11	27911042	T-C	Homo	INTERGENIC
SBS	Chr11	28623223	G-T	Homo	UTR_5_PRIME
SBS	Chr12	8154924	G-T	Hetero	INTERGENIC
SBS	Chr12	8372676	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	226547	226549	2	OsKitaake06g001200
Deletion	Chr8	1364660	1364661	1
Deletion	Chr1	3048718	3048721	3
Deletion	Chr3	3894528	3894545	17
Deletion	Chr12	4277095	4277097	2
Deletion	Chr4	5096564	5096583	19
Deletion	Chr1	5354818	5354821	3	OsKitaake01g069500
Deletion	Chr2	7511371	7511374	3
Deletion	Chr10	7795148	7795149	1
Deletion	Chr10	7795380	7795389	9
Deletion	Chr12	10844789	10844796	7
Deletion	Chr12	11474888	11474893	5
Deletion	Chr5	13887659	13887664	5
Deletion	Chr1	16288253	16288258	5
Deletion	Chr7	16436053	16436057	4
Deletion	Chr12	16750923	16750943	20
Deletion	Chr5	19304770	19304775	5
Deletion	Chr5	20846048	20846056	8
Deletion	Chr7	20958491	20958492	1
Deletion	Chr7	21663776	21663788	12
Deletion	Chr4	22580289	22580293	4
Deletion	Chr2	26013782	26013791	9
Deletion	Chr4	28759909	28759912	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10004091	10013068	OsKitaake04g053700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes