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Mutant Information

Mutant Name	FN1000-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1000-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22238009 C-A Hetero INTRON
SBS Chr1 28037840 C-A Homo INTERGENIC
SBS Chr2 3111807 C-T Hetero INTERGENIC
SBS Chr2 14501737 A-T Hetero INTERGENIC
SBS Chr2 25827059 A-G Hetero INTERGENIC
SBS Chr2 27880008 G-A Hetero INTERGENIC
SBS Chr2 36738485 T-A Hetero INTERGENIC
SBS Chr3 15789957 G-A Homo UTR_3_PRIME
SBS Chr4 29890899 T-C Hetero UTR_5_PRIME
SBS Chr5 12018660 G-A Homo INTERGENIC
SBS Chr5 13175693 C-T Homo INTERGENIC
SBS Chr6 8788124 G-A Hetero INTERGENIC
SBS Chr6 14730399 T-G Hetero INTERGENIC
SBS Chr6 19854688 C-T Hetero INTERGENIC
SBS Chr6 25358266 C-A Homo INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 9421169 C-T Hetero INTERGENIC
SBS Chr7 17219394 A-C Hetero INTERGENIC
SBS Chr7 27676412 T-A Hetero INTERGENIC
SBS Chr9 9353597 G-T Hetero INTERGENIC
SBS Chr11 6020363 C-T Hetero UTR_3_PRIME
SBS Chr11 25833857 G-A Homo INTERGENIC
SBS Chr12 14174819 C-A Hetero INTERGENIC
SBS Chr12 23837552 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g192000

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr9 563145 563212 67
Deletion Chr7 4187126 4187128 2
Deletion Chr2 7371245 7371252 7
Deletion Chr12 9876659 9876805 146
Deletion Chr4 11485151 11485152 1
Deletion Chr11 15383472 15383477 5
Deletion Chr7 15809727 15809728 1
Deletion Chr3 23427951 23427953 2
Deletion Chr3 26898319 26898321 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 6393556 6393559 2
Insertion Chr8 2708292 2708294 1
Insertion Chr12 22079611 22079613 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7685851 8504028 OsKitaake12g083200
Inversion Chr12 7685863 8505220 OsKitaake12g083200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22238009	C-A	Hetero	INTRON
SBS	Chr1	28037840	C-A	Homo	INTERGENIC
SBS	Chr2	3111807	C-T	Hetero	INTERGENIC
SBS	Chr2	14501737	A-T	Hetero	INTERGENIC
SBS	Chr2	25827059	A-G	Hetero	INTERGENIC
SBS	Chr2	27880008	G-A	Hetero	INTERGENIC
SBS	Chr2	36738485	T-A	Hetero	INTERGENIC
SBS	Chr3	15789957	G-A	Homo	UTR_3_PRIME
SBS	Chr4	29890899	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	12018660	G-A	Homo	INTERGENIC
SBS	Chr5	13175693	C-T	Homo	INTERGENIC
SBS	Chr6	8788124	G-A	Hetero	INTERGENIC
SBS	Chr6	14730399	T-G	Hetero	INTERGENIC
SBS	Chr6	19854688	C-T	Hetero	INTERGENIC
SBS	Chr6	25358266	C-A	Homo	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	9421169	C-T	Hetero	INTERGENIC
SBS	Chr7	17219394	A-C	Hetero	INTERGENIC
SBS	Chr7	27676412	T-A	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Hetero	INTERGENIC
SBS	Chr11	6020363	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	25833857	G-A	Homo	INTERGENIC
SBS	Chr12	14174819	C-A	Hetero	INTERGENIC
SBS	Chr12	23837552	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g192000

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr9	563145	563212	67
Deletion	Chr7	4187126	4187128	2
Deletion	Chr2	7371245	7371252	7
Deletion	Chr12	9876659	9876805	146
Deletion	Chr4	11485151	11485152	1
Deletion	Chr11	15383472	15383477	5
Deletion	Chr7	15809727	15809728	1
Deletion	Chr3	23427951	23427953	2
Deletion	Chr3	26898319	26898321	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7685851	8504028	OsKitaake12g083200
Inversion	Chr12	7685863	8505220	OsKitaake12g083200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes