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| Mutant Information |
|---|
| Mutant Name | FN1001-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1001-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7694176 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 19531103 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 23591019 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 30520400 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 41262397 | G-C | Hetero | INTRON | |
| SBS | Chr2 | 27505578 | C-T | Homo | INTRON | |
| SBS | Chr3 | 4440144 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 6896934 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 16679155 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3090198 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 10983945 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 13096643 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20826231 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7366342 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9766398 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9915997 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 12098422 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27360096 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2378164 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4747555 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12871686 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13384274 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20580960 | C-G | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3956327 | 3956330 | 3 | |
| Deletion | Chr9 | 9208529 | 9208531 | 2 | |
| Deletion | Chr1 | 21179453 | 21179461 | 8 | |
| Deletion | Chr1 | 21788083 | 21788089 | 6 | |
| Deletion | Chr6 | 22249338 | 22249345 | 7 | |
| Deletion | Chr11 | 24811230 | 24811231 | 1 | |
| Deletion | Chr1 | 25191859 | 25191872 | 13 | |
| Deletion | Chr8 | 28225551 | 28225562 | 11 | |
| Deletion | Chr1 | 36427282 | 36427283 | 1 | OsKitaake01g386601 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 3563662 | 3563665 | 2 | |
| Insertion | Chr12 | 19669483 | 19669486 | 2 | |
| Insertion | Chr12 | 11697894 | 11697897 | 2 |
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 5882009 | 6059149 | 2 |
| Inversion | Chr8 | 6020739 | 6057464 | 2 |
| Inversion | Chr4 | 9907843 | 9914439 | |
| Inversion | Chr1 | 20188671 | 20201154 | |
| Inversion | Chr1 | 20188675 | 20201224 | |
| Inversion | Chr11 | 26871326 | 27448388 | OsKitaake11g218500 |
| Inversion | Chr1 | 35291019 | 36237952 | OsKitaake01g372000 |
| Inversion | Chr1 | 35291022 | 36237958 | OsKitaake01g372000 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8627653 | Chr5 | 15033386 |