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| Mutant Information |
|---|
| Mutant Name | FN1002-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1002-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 27196988 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27285330 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 31757446 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 34050950 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 3946337 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11194037 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 18699343 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 5170587 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12271025 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 16920283 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28768320 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 9181612 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 11779597 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28141632 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20461459 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 3389609 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 235973 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6400509 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 11430680 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22172517 | T-C | Hetero | SYNONYMOUS_CODING |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 6425591 | 6425596 | 5 | |
| Deletion | Chr2 | 10266413 | 10266415 | 2 | |
| Deletion | Chr4 | 12193141 | 12193142 | 1 | |
| Deletion | Chr6 | 12643066 | 12643067 | 1 | |
| Deletion | Chr7 | 13722001 | 13730000 | 7999 | |
| Deletion | Chr1 | 16387068 | 16387069 | 1 | |
| Deletion | Chr1 | 17460978 | 17460979 | 1 | |
| Deletion | Chr6 | 18095001 | 18113000 | 17999 | OsKitaake06g166100 |
| Deletion | Chr7 | 18837952 | 18837953 | 1 | OsKitaake07g153300 |
| Deletion | Chr7 | 20409394 | 20409400 | 6 | |
| Deletion | Chr3 | 20662407 | 20662408 | 1 | |
| Deletion | Chr1 | 25963001 | 26016000 | 52999 | 6 |
| Deletion | Chr5 | 26038375 | 26038382 | 7 | |
| Deletion | Chr6 | 27897904 | 27897912 | 8 | |
| Deletion | Chr4 | 35607958 | 35607961 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 30316020 | 30316024 | 3 | |
| Insertion | Chr11 | 5273201 | 5273203 | 1 | |
| Insertion | Chr7 | 12248929 | 12248931 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 6024853 | 6629605 | OsKitaake10g041500 |
| Inversion | Chr10 | 6025173 | 6629604 | OsKitaake10g041500 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5276171 | Chr1 | 17462290 | |
| Translocation | Chr10 | 6024859 | Chr8 | 529774 | OsKitaake10g041500 |
| Translocation | Chr10 | 6025170 | Chr8 | 528511 | OsKitaake10g041500 |
| Translocation | Chr10 | 6096773 | Chr2 | 31793635 | OsKitaake02g323800 |
| Translocation | Chr10 | 6096780 | Chr2 | 31738295 |