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Mutant Information

Mutant Name	FN1003-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1003-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2343535 A-G Hetero INTERGENIC
SBS Chr1 5807734 T-G Homo INTERGENIC
SBS Chr2 3155612 C-T Homo INTERGENIC
SBS Chr3 14174319 A-T Hetero UTR_3_PRIME
SBS Chr3 34621609 G-T Hetero STOP_GAINED OsKitaake03g376300
SBS Chr3 34621610 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g376300
SBS Chr3 35792174 T-C Hetero INTERGENIC
SBS Chr4 3940240 C-T Hetero INTERGENIC
SBS Chr4 18490971 G-A Hetero INTERGENIC
SBS Chr5 19089097 A-C Hetero INTERGENIC
SBS Chr5 19860408 C-T Hetero INTERGENIC
SBS Chr6 26213259 C-T Hetero INTERGENIC
SBS Chr7 2849134 T-C Hetero INTERGENIC
SBS Chr7 9743573 C-T Homo INTERGENIC
SBS Chr7 13392661 G-A Homo INTERGENIC
SBS Chr9 19280242 T-A Hetero INTERGENIC
SBS Chr10 22725307 T-A Hetero INTERGENIC
SBS Chr11 9539040 A-G Homo INTERGENIC
SBS Chr11 10741740 A-G Hetero INTERGENIC
SBS Chr12 5683795 G-T Hetero INTERGENIC
SBS Chr12 11813240 A-T Hetero INTERGENIC
SBS Chr12 11813244 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1111484 1111485 1
Deletion Chr9 11651172 11651173 1
Deletion Chr8 15920459 15920474 15
Deletion Chr7 16427001 16486000 58999 4
Deletion Chr4 17560579 17560580 1
Deletion Chr4 17722892 17722893 1
Deletion Chr7 18499001 18517000 17999 3
Deletion Chr3 26827580 26827581 1
Deletion Chr4 34148543 34148557 14
Deletion Chr2 34685349 34685358 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 6167908 6167910 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 8642990 9295347
Inversion Chr9 8642991 9295354

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2343535	A-G	Hetero	INTERGENIC
SBS	Chr1	5807734	T-G	Homo	INTERGENIC
SBS	Chr2	3155612	C-T	Homo	INTERGENIC
SBS	Chr3	14174319	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	34621609	G-T	Hetero	STOP_GAINED	OsKitaake03g376300
SBS	Chr3	34621610	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g376300
SBS	Chr3	35792174	T-C	Hetero	INTERGENIC
SBS	Chr4	3940240	C-T	Hetero	INTERGENIC
SBS	Chr4	18490971	G-A	Hetero	INTERGENIC
SBS	Chr5	19089097	A-C	Hetero	INTERGENIC
SBS	Chr5	19860408	C-T	Hetero	INTERGENIC
SBS	Chr6	26213259	C-T	Hetero	INTERGENIC
SBS	Chr7	2849134	T-C	Hetero	INTERGENIC
SBS	Chr7	9743573	C-T	Homo	INTERGENIC
SBS	Chr7	13392661	G-A	Homo	INTERGENIC
SBS	Chr9	19280242	T-A	Hetero	INTERGENIC
SBS	Chr10	22725307	T-A	Hetero	INTERGENIC
SBS	Chr11	9539040	A-G	Homo	INTERGENIC
SBS	Chr11	10741740	A-G	Hetero	INTERGENIC
SBS	Chr12	5683795	G-T	Hetero	INTERGENIC
SBS	Chr12	11813240	A-T	Hetero	INTERGENIC
SBS	Chr12	11813244	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1111484	1111485	1
Deletion	Chr9	11651172	11651173	1
Deletion	Chr8	15920459	15920474	15
Deletion	Chr7	16427001	16486000	58999	4
Deletion	Chr4	17560579	17560580	1
Deletion	Chr4	17722892	17722893	1
Deletion	Chr7	18499001	18517000	17999	3
Deletion	Chr3	26827580	26827581	1
Deletion	Chr4	34148543	34148557	14
Deletion	Chr2	34685349	34685358	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8642990	9295347
Inversion	Chr9	8642991	9295354

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes