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| Mutant Information |
|---|
| Mutant Name | FN1006-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1006-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14132871 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19394511 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 20208474 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 22876378 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 26248833 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 4750138 | T-G | Homo | INTERGENIC | |
| SBS | Chr3 | 28770341 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 6365729 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 6367543 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 10522417 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 13836797 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 15008674 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17078696 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 14027731 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22363652 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 11275038 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 16621873 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 28280154 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 527011 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6851580 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12185587 | G-T | Hetero | INTRON | |
| SBS | Chr7 | 12185588 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 25271376 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25528286 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g201400 |
| SBS | Chr8 | 25827821 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 27190949 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 9847364 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21725252 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 15090397 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 15939031 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 2631993 | G-A | Homo | INTRON | |
| SBS | Chr12 | 2631994 | C-A | Homo | INTRON | |
| SBS | Chr12 | 3234898 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18770047 | C-T | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3758214 | 3758215 | 1 | |
| Deletion | Chr3 | 4607924 | 4607926 | 2 | |
| Deletion | Chr12 | 6278119 | 6278128 | 9 | |
| Deletion | Chr5 | 8518372 | 8518377 | 5 | |
| Deletion | Chr7 | 9503404 | 9503405 | 1 | |
| Deletion | Chr12 | 11716620 | 11716785 | 165 | |
| Deletion | Chr3 | 13058529 | 13058531 | 2 | |
| Deletion | Chr1 | 16392001 | 16431000 | 38999 | 3 |
| Deletion | Chr7 | 17030064 | 17030066 | 2 | |
| Deletion | Chr11 | 20421729 | 20421730 | 1 | |
| Deletion | Chr12 | 21283159 | 21283161 | 2 | |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
| Deletion | Chr8 | 24422001 | 24562000 | 139999 | 23 |
| Deletion | Chr3 | 25789070 | 25789071 | 1 | |
| Deletion | Chr1 | 27255660 | 27255665 | 5 | |
| Deletion | Chr1 | 30998397 | 30998408 | 11 | |
| Deletion | Chr1 | 38340563 | 38340577 | 14 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 6184730 | 6491536 | |
| Inversion | Chr4 | 6184735 | 6491584 | |
| Inversion | Chr1 | 19342436 | 19389425 | |
| Inversion | Chr1 | 19342441 | 19389427 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 5056332 | Chr1 | 16529678 | OsKitaake01g176900 |