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| Mutant Information |
|---|
| Mutant Name | FN1007-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1007-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 17
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10714359 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35258443 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3532015 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 9675488 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16392547 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 1331636 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 11345843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14394188 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7991610 | T-A | Hetero | STOP_GAINED | OsKitaake07g088200 |
| SBS | Chr8 | 33099 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g000300 |
| SBS | Chr9 | 4755351 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8388581 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 8612523 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 10660919 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18732487 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19370664 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23583530 | G-T | Hetero | INTRON |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 88291 | 88645 | 354 | |
| Deletion | Chr1 | 36566229 | 36566232 | 3 | OsKitaake01g388600 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 30677741 | 30677744 | 2 | |
| Insertion | Chr7 | 2763171 | 2763174 | 2 |