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Mutant Information

Mutant Name	FN1008-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1008-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 433289 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 22045676 T-A Hetero INTERGENIC
SBS Chr1 38844635 T-C Homo INTERGENIC
SBS Chr2 11216364 G-A Hetero INTERGENIC
SBS Chr3 12611231 C-T Hetero INTERGENIC
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr3 17587531 C-T Hetero INTERGENIC
SBS Chr3 28043791 A-C Homo INTERGENIC
SBS Chr4 192217 A-T Hetero INTRON
SBS Chr4 10864812 C-T Hetero INTERGENIC
SBS Chr4 13729219 T-A Hetero INTERGENIC
SBS Chr4 18661279 G-A Hetero INTERGENIC
SBS Chr4 18667668 C-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr5 27492201 T-C Hetero INTERGENIC
SBS Chr6 19316522 A-G Hetero INTERGENIC
SBS Chr7 12704791 T-G Homo INTRON
SBS Chr8 3458262 T-C Homo INTRON
SBS Chr8 6798980 T-C Hetero INTERGENIC
SBS Chr8 11737366 G-C Hetero INTERGENIC
SBS Chr8 20181273 G-A Hetero INTERGENIC
SBS Chr9 13475850 T-C Homo INTRON
SBS Chr9 20074486 G-A Hetero INTERGENIC
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr10 21425899 C-A Homo INTERGENIC
SBS Chr12 749179 A-C Hetero INTERGENIC
SBS Chr12 1803134 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g026900
SBS Chr12 9513409 T-A Hetero INTERGENIC
SBS Chr12 13774918 G-A Hetero INTERGENIC
SBS Chr12 15968949 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2861198 2861200 2
Deletion Chr7 2970891 2970900 9
Deletion Chr1 10783397 10783400 3
Deletion Chr12 11602024 11602028 4
Deletion Chr3 14874022 14874024 2
Deletion Chr1 14979013 14979027 14 OsKitaake01g142300
Deletion Chr2 17008897 17008900 3
Deletion Chr6 18099415 18099541 126
Deletion Chr4 19818423 19818424 1
Deletion Chr10 20175110 20175114 4
Deletion Chr10 20703177 20703186 9
Deletion Chr3 23180574 23180576 2
Deletion Chr8 23676001 23733000 56999 5
Deletion Chr5 30208052 30208406 354
Deletion Chr3 36371796 36371798 2
Deletion Chr1 40236002 40236009 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4713878 4713881 2
Insertion Chr1 32216850 32216853 2
Insertion Chr4 20397799 20397802 2
Insertion Chr10 18686981 18686984 2
Insertion Chr4 9496147 9496149 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 5810742 5810964
Inversion Chr8 5810751 5810971
Inversion Chr6 14721423 14722377
Inversion Chr6 14721439 14722229

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3928379 Chr6 24149454 OsKitaake06g214000
Translocation Chr6 8273200 Chr5 14348333 OsKitaake05g109700
Translocation Chr6 8273206 Chr5 14348613 OsKitaake05g109700
Translocation Chr4 13146345 Chr3 35445328
Translocation Chr6 17443613 Chr4 13147946
Translocation Chr6 17443615 Chr4 13146938
Translocation Chr3 35445336 Chr1 2076946

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	433289	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	22045676	T-A	Hetero	INTERGENIC
SBS	Chr1	38844635	T-C	Homo	INTERGENIC
SBS	Chr2	11216364	G-A	Hetero	INTERGENIC
SBS	Chr3	12611231	C-T	Hetero	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr3	17587531	C-T	Hetero	INTERGENIC
SBS	Chr3	28043791	A-C	Homo	INTERGENIC
SBS	Chr4	192217	A-T	Hetero	INTRON
SBS	Chr4	10864812	C-T	Hetero	INTERGENIC
SBS	Chr4	13729219	T-A	Hetero	INTERGENIC
SBS	Chr4	18661279	G-A	Hetero	INTERGENIC
SBS	Chr4	18667668	C-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27492201	T-C	Hetero	INTERGENIC
SBS	Chr6	19316522	A-G	Hetero	INTERGENIC
SBS	Chr7	12704791	T-G	Homo	INTRON
SBS	Chr8	3458262	T-C	Homo	INTRON
SBS	Chr8	6798980	T-C	Hetero	INTERGENIC
SBS	Chr8	11737366	G-C	Hetero	INTERGENIC
SBS	Chr8	20181273	G-A	Hetero	INTERGENIC
SBS	Chr9	13475850	T-C	Homo	INTRON
SBS	Chr9	20074486	G-A	Hetero	INTERGENIC
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr10	21425899	C-A	Homo	INTERGENIC
SBS	Chr12	749179	A-C	Hetero	INTERGENIC
SBS	Chr12	1803134	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g026900
SBS	Chr12	9513409	T-A	Hetero	INTERGENIC
SBS	Chr12	13774918	G-A	Hetero	INTERGENIC
SBS	Chr12	15968949	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2861198	2861200	2
Deletion	Chr7	2970891	2970900	9
Deletion	Chr1	10783397	10783400	3
Deletion	Chr12	11602024	11602028	4
Deletion	Chr3	14874022	14874024	2
Deletion	Chr1	14979013	14979027	14	OsKitaake01g142300
Deletion	Chr2	17008897	17008900	3
Deletion	Chr6	18099415	18099541	126
Deletion	Chr4	19818423	19818424	1
Deletion	Chr10	20175110	20175114	4
Deletion	Chr10	20703177	20703186	9
Deletion	Chr3	23180574	23180576	2
Deletion	Chr8	23676001	23733000	56999	5
Deletion	Chr5	30208052	30208406	354
Deletion	Chr3	36371796	36371798	2
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5810742	5810964
Inversion	Chr8	5810751	5810971
Inversion	Chr6	14721423	14722377
Inversion	Chr6	14721439	14722229

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes