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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1009-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1009-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18638531 C-T Homo INTERGENIC
SBS Chr1 29217174 G-A Hetero INTERGENIC
SBS Chr1 29217175 T-G Hetero INTERGENIC
SBS Chr1 29217178 A-G Hetero INTERGENIC
SBS Chr1 32387137 C-T Hetero INTERGENIC
SBS Chr1 37368340 G-A Hetero UTR_3_PRIME
SBS Chr1 38306381 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g408200
SBS Chr1 42168234 A-G Hetero INTERGENIC
SBS Chr2 2910344 T-C Homo INTERGENIC
SBS Chr2 14554027 A-G Hetero INTERGENIC
SBS Chr2 19399142 G-A Hetero INTERGENIC
SBS Chr2 24589897 C-T Homo INTERGENIC
SBS Chr3 268262 G-A Hetero INTERGENIC
SBS Chr3 268263 C-T Hetero INTERGENIC
SBS Chr3 10220742 C-A Hetero INTRON
SBS Chr3 19925856 T-A Homo INTERGENIC
SBS Chr3 19925857 T-A Homo INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr4 4156045 G-A Hetero INTERGENIC
SBS Chr4 4380252 C-T Hetero INTERGENIC
SBS Chr5 6767587 T-A Hetero INTERGENIC
SBS Chr6 17186859 A-G Hetero INTERGENIC
SBS Chr6 19783297 T-G Hetero INTERGENIC
SBS Chr6 26875538 G-T Hetero INTERGENIC
SBS Chr6 27071027 T-G Hetero INTERGENIC
SBS Chr7 16250543 T-A Hetero INTRON
SBS Chr8 16196469 G-A Hetero INTERGENIC
SBS Chr9 11530677 T-C Hetero INTERGENIC
SBS Chr9 11675886 T-C Hetero INTERGENIC
SBS Chr10 1892066 C-T Hetero INTERGENIC
SBS Chr11 17346228 G-T Hetero INTERGENIC
SBS Chr11 21493780 A-C Hetero INTERGENIC
SBS Chr11 23381457 T-C Hetero INTERGENIC
SBS Chr11 26900971 T-C Hetero INTERGENIC
SBS Chr12 2417271 A-G Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2356662 2356663 1 OsKitaake02g034600
Deletion Chr3 6168919 6168925 6
Deletion Chr10 10338590 10338712 122
Deletion Chr2 12602001 12625000 22999 OsKitaake02g141500
Deletion Chr1 23195242 23195244 2 OsKitaake01g221800
Deletion Chr7 23844680 23844689 9
Deletion Chr1 37571001 37587000 15999

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24345721 24345724 2
Insertion Chr5 8215731 8215734 2
Insertion Chr10 14863282 14863290 7
Insertion Chr11 14627212 14627215 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 7230260 Chr2 11293459 OsKitaake02g131600
Translocation Chr4 16959359 Chr1 37568317
Translocation Chr9 21898822 Chr6 29326215

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18638531	C-T	Homo	INTERGENIC
SBS	Chr1	29217174	G-A	Hetero	INTERGENIC
SBS	Chr1	29217175	T-G	Hetero	INTERGENIC
SBS	Chr1	29217178	A-G	Hetero	INTERGENIC
SBS	Chr1	32387137	C-T	Hetero	INTERGENIC
SBS	Chr1	37368340	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	38306381	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g408200
SBS	Chr1	42168234	A-G	Hetero	INTERGENIC
SBS	Chr2	2910344	T-C	Homo	INTERGENIC
SBS	Chr2	14554027	A-G	Hetero	INTERGENIC
SBS	Chr2	19399142	G-A	Hetero	INTERGENIC
SBS	Chr2	24589897	C-T	Homo	INTERGENIC
SBS	Chr3	268262	G-A	Hetero	INTERGENIC
SBS	Chr3	268263	C-T	Hetero	INTERGENIC
SBS	Chr3	10220742	C-A	Hetero	INTRON
SBS	Chr3	19925856	T-A	Homo	INTERGENIC
SBS	Chr3	19925857	T-A	Homo	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr4	4156045	G-A	Hetero	INTERGENIC
SBS	Chr4	4380252	C-T	Hetero	INTERGENIC
SBS	Chr5	6767587	T-A	Hetero	INTERGENIC
SBS	Chr6	17186859	A-G	Hetero	INTERGENIC
SBS	Chr6	19783297	T-G	Hetero	INTERGENIC
SBS	Chr6	26875538	G-T	Hetero	INTERGENIC
SBS	Chr6	27071027	T-G	Hetero	INTERGENIC
SBS	Chr7	16250543	T-A	Hetero	INTRON
SBS	Chr8	16196469	G-A	Hetero	INTERGENIC
SBS	Chr9	11530677	T-C	Hetero	INTERGENIC
SBS	Chr9	11675886	T-C	Hetero	INTERGENIC
SBS	Chr10	1892066	C-T	Hetero	INTERGENIC
SBS	Chr11	17346228	G-T	Hetero	INTERGENIC
SBS	Chr11	21493780	A-C	Hetero	INTERGENIC
SBS	Chr11	23381457	T-C	Hetero	INTERGENIC
SBS	Chr11	26900971	T-C	Hetero	INTERGENIC
SBS	Chr12	2417271	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2356662	2356663	1	OsKitaake02g034600
Deletion	Chr3	6168919	6168925	6
Deletion	Chr10	10338590	10338712	122
Deletion	Chr2	12602001	12625000	22999	OsKitaake02g141500
Deletion	Chr1	23195242	23195244	2	OsKitaake01g221800
Deletion	Chr7	23844680	23844689	9
Deletion	Chr1	37571001	37587000	15999

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	7230260	Chr2	11293459	OsKitaake02g131600
Translocation	Chr4	16959359	Chr1	37568317
Translocation	Chr9	21898822	Chr6	29326215

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes