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Mutant Information |
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Mutant Name | FN1011-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1011-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 549902 | T-A | Hetero | INTRON | |
SBS | Chr1 | 11682905 | C-T | Homo | INTERGENIC | |
SBS | Chr1 | 16244276 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 9593876 | A-T | Hetero | INTERGENIC | |
SBS | Chr2 | 12153380 | C-T | Hetero | INTRON | |
SBS | Chr2 | 21432193 | G-T | Hetero | INTERGENIC | |
SBS | Chr3 | 12456475 | G-A | Hetero | INTERGENIC | |
SBS | Chr3 | 13642237 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 17769612 | T-A | Hetero | INTERGENIC | |
SBS | Chr3 | 23980445 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 24369253 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 28030657 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 18664141 | T-A | Hetero | INTERGENIC | |
SBS | Chr4 | 21515909 | T-C | Hetero | UTR_3_PRIME | |
SBS | Chr5 | 3822038 | T-A | Hetero | INTERGENIC | |
SBS | Chr6 | 28959387 | T-A | Hetero | INTERGENIC | |
SBS | Chr6 | 29886195 | T-C | Hetero | INTERGENIC | |
SBS | Chr7 | 5153383 | A-C | Hetero | INTERGENIC | |
SBS | Chr7 | 7361995 | T-C | Hetero | INTERGENIC | |
SBS | Chr7 | 12365323 | A-T | Hetero | INTERGENIC | |
SBS | Chr8 | 272290 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g003700 |
SBS | Chr8 | 14980562 | C-G | Hetero | INTERGENIC | |
SBS | Chr9 | 13261101 | C-T | Hetero | SYNONYMOUS_CODING | |
SBS | Chr9 | 13466224 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 12113110 | T-G | Hetero | INTERGENIC | |
SBS | Chr10 | 12401806 | A-C | Hetero | INTRON | |
SBS | Chr10 | 17515454 | T-C | Homo | INTRON | |
SBS | Chr10 | 23917836 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g206600 |
SBS | Chr11 | 6063223 | C-T | Hetero | INTERGENIC | |
SBS | Chr11 | 24807073 | T-A | Hetero | INTERGENIC | |
SBS | Chr11 | 27028750 | G-A | Hetero | UTR_3_PRIME | |
SBS | Chr12 | 20583340 | T-C | Hetero | INTERGENIC | |
SBS | Chr12 | 22816586 | C-T | Hetero | INTRON | |
SBS | Chr12 | 22816587 | G-T | Hetero | INTRON | |
SBS | Chr12 | 26173471 | C-A | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr7 | 2933244 | 2933249 | 5 | |
Deletion | Chr11 | 4675495 | 4675496 | 1 | |
Deletion | Chr5 | 6370524 | 6370527 | 3 | |
Deletion | Chr3 | 6503001 | 6559000 | 55999 | 9 |
Deletion | Chr5 | 11117867 | 11117868 | 1 | |
Deletion | Chr2 | 12302834 | 12302840 | 6 | |
Deletion | Chr10 | 12757050 | 12757051 | 1 | |
Deletion | Chr4 | 13010001 | 13076000 | 65999 | |
Deletion | Chr4 | 13184001 | 13842000 | 657999 | 40 |
Deletion | Chr2 | 13530965 | 13530972 | 7 | |
Deletion | Chr2 | 13621554 | 13621555 | 1 | |
Deletion | Chr4 | 18736323 | 18736330 | 7 | |
Deletion | Chr4 | 22924439 | 22924440 | 1 | |
Deletion | Chr1 | 29077620 | 29077622 | 2 | |
Deletion | Chr2 | 35332312 | 35332322 | 10 | |
Deletion | Chr3 | 35357204 | 35357205 | 1 | |
Deletion | Chr2 | 36433154 | 36433157 | 3 | OsKitaake02g386200 |
Insertions: 6
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr4 | 13011684 | 13181339 | |
Inversion | Chr4 | 13079885 | 13841703 | |
Inversion | Chr10 | 16444064 | 16752579 | |
Inversion | Chr4 | 21137995 | 21844084 | OsKitaake04g116200 |
Inversion | Chr4 | 21137996 | 21874701 | 2 |
Translocations: 11
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr11 | 277940 | Chr5 | 9371826 | |
Translocation | Chr10 | 8629694 | Chr2 | 13621548 | |
Translocation | Chr5 | 9371822 | Chr4 | 21843808 | |
Translocation | Chr5 | 9371826 | Chr2 | 28949213 | |
Translocation | Chr5 | 9373364 | Chr2 | 28948977 | |
Translocation | Chr4 | 13016641 | Chr2 | 28969340 | |
Translocation | Chr10 | 16444065 | Chr2 | 28949829 | OsKitaake02g291400 |
Translocation | Chr10 | 16752565 | Chr3 | 24836211 | |
Translocation | Chr11 | 19620914 | Chr2 | 28967324 | |
Translocation | Chr4 | 21844073 | Chr2 | 28949212 | |
Translocation | Chr3 | 24837428 | Chr2 | 28967296 |