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Mutant Information 

Mutant NameFN1011-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN1011-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr1549902T-AHeteroINTRON
SBS  Chr111682905C-THomoINTERGENIC
SBS  Chr116244276G-AHomoINTERGENIC
SBS  Chr29593876A-THeteroINTERGENIC
SBS  Chr212153380C-THeteroINTRON
SBS  Chr221432193G-THeteroINTERGENIC
SBS  Chr312456475G-AHeteroINTERGENIC
SBS  Chr313642237C-THeteroINTERGENIC
SBS  Chr317769612T-AHeteroINTERGENIC
SBS  Chr323980445C-THeteroINTERGENIC
SBS  Chr324369253C-THeteroINTERGENIC
SBS  Chr328030657G-AHeteroINTERGENIC
SBS  Chr418664141T-AHeteroINTERGENIC
SBS  Chr421515909T-CHeteroUTR_3_PRIME
SBS  Chr53822038T-AHeteroINTERGENIC
SBS  Chr628959387T-AHeteroINTERGENIC
SBS  Chr629886195T-CHeteroINTERGENIC
SBS  Chr75153383A-CHeteroINTERGENIC
SBS  Chr77361995T-CHeteroINTERGENIC
SBS  Chr712365323A-THeteroINTERGENIC
SBS  Chr8272290A-THeteroNON_SYNONYMOUS_CODINGOsKitaake08g003700
SBS  Chr814980562C-GHeteroINTERGENIC
SBS  Chr913261101C-THeteroSYNONYMOUS_CODING
SBS  Chr913466224C-THeteroINTERGENIC
SBS  Chr1012113110T-GHeteroINTERGENIC
SBS  Chr1012401806A-CHeteroINTRON
SBS  Chr1017515454T-CHomoINTRON
SBS  Chr1023917836C-GHomoNON_SYNONYMOUS_CODINGOsKitaake10g206600
SBS  Chr116063223C-THeteroINTERGENIC
SBS  Chr1124807073T-AHeteroINTERGENIC
SBS  Chr1127028750G-AHeteroUTR_3_PRIME
SBS  Chr1220583340T-CHeteroINTERGENIC
SBS  Chr1222816586C-THeteroINTRON
SBS  Chr1222816587G-THeteroINTRON
SBS  Chr1226173471C-AHeteroINTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr7293324429332495
Deletion  Chr11467549546754961
Deletion  Chr5637052463705273
Deletion  Chr365030016559000559999
Deletion  Chr511117867111178681
Deletion  Chr212302834123028406
Deletion  Chr1012757050127570511
Deletion  Chr4130100011307600065999
Deletion  Chr4131840011384200065799940
Deletion  Chr213530965135309727
Deletion  Chr213621554136215551
Deletion  Chr418736323187363307
Deletion  Chr422924439229244401
Deletion  Chr129077620290776222
Deletion  Chr2353323123533232210
Deletion  Chr335357204353572051
Deletion  Chr236433154364331573OsKitaake02g386200

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr215760771157607742
Insertion  Chr235509979355099844
Insertion  Chr420651275206512782
Insertion  Chr11642065664206592
Insertion  Chr12102084210208452
Insertion  Chr1224610157246101602

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr41301168413181339
Inversion  Chr41307988513841703
Inversion  Chr101644406416752579
Inversion  Chr42113799521844084OsKitaake04g116200
Inversion  Chr421137996218747012

Translocations: 11

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr11277940Chr59371826
Translocation  Chr108629694Chr213621548
Translocation  Chr59371822Chr421843808
Translocation  Chr59371826Chr228949213
Translocation  Chr59373364Chr228948977
Translocation  Chr413016641Chr228969340
Translocation  Chr1016444065Chr228949829OsKitaake02g291400
Translocation  Chr1016752565Chr324836211
Translocation  Chr1119620914Chr228967324
Translocation  Chr421844073Chr228949212
Translocation  Chr324837428Chr228967296