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Mutant Information

Mutant Name	FN1012-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1012-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12625868 A-T Hetero INTERGENIC
SBS Chr1 16423327 A-G Homo INTERGENIC
SBS Chr1 21555976 T-C Hetero INTERGENIC
SBS Chr1 39707858 T-C Hetero INTERGENIC
SBS Chr1 42429496 C-T Homo INTERGENIC
SBS Chr1 42771971 G-A Homo INTERGENIC
SBS Chr2 15086480 G-A Hetero INTERGENIC
SBS Chr2 18292456 G-A Hetero INTERGENIC
SBS Chr2 31521914 A-G Homo INTERGENIC
SBS Chr3 5510951 G-A Hetero INTERGENIC
SBS Chr3 9674371 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g131600
SBS Chr3 13263324 T-C Hetero INTERGENIC
SBS Chr3 36595830 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g407300
SBS Chr4 10523555 G-T Hetero INTERGENIC
SBS Chr4 11236040 T-A Hetero INTERGENIC
SBS Chr4 27099569 C-T Hetero INTERGENIC
SBS Chr5 5692261 G-T Homo INTERGENIC
SBS Chr5 5692262 C-T Homo INTERGENIC
SBS Chr5 29564114 A-G Hetero INTERGENIC
SBS Chr6 30830616 A-G Hetero INTRON
SBS Chr7 4489792 T-C Hetero INTERGENIC
SBS Chr7 8742477 G-A Hetero INTRON
SBS Chr7 13944132 C-G Hetero INTERGENIC
SBS Chr7 14314008 T-A Hetero INTRON
SBS Chr7 24191390 T-A Hetero INTERGENIC
SBS Chr7 26441638 G-A Hetero INTERGENIC
SBS Chr7 27340068 T-A Hetero INTERGENIC
SBS Chr7 29508943 C-G Hetero SYNONYMOUS_CODING
SBS Chr8 6755114 A-T Hetero INTERGENIC
SBS Chr8 9864444 G-A Hetero INTRON
SBS Chr9 10893503 C-T Hetero INTERGENIC
SBS Chr9 19313125 A-C Hetero INTRON
SBS Chr10 9978926 C-T Hetero INTERGENIC
SBS Chr10 12653367 G-A Hetero INTERGENIC
SBS Chr10 20870609 A-C Homo INTERGENIC
SBS Chr11 3766574 G-T Homo INTERGENIC
SBS Chr11 12426370 G-A Homo INTERGENIC
SBS Chr11 12426371 C-A Homo INTERGENIC
SBS Chr12 9826111 A-G Hetero INTERGENIC
SBS Chr12 13644193 A-G Hetero INTERGENIC
SBS Chr12 13769323 C-A Hetero INTERGENIC
SBS Chr12 16831772 T-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1330726 1330729 3
Deletion Chr1 8847659 8847664 5
Deletion Chr6 10245364 10245367 3
Deletion Chr9 10443001 10486000 42999 3
Deletion Chr9 11505618 11505619 1
Deletion Chr6 17876552 17876553 1
Deletion Chr8 19284001 19301000 16999
Deletion Chr5 30258420 30258421 1
Deletion Chr2 36674877 36674878 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 26506519 26506522 2
Insertion Chr6 29025531 29025533 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18383663 18946322 OsKitaake05g148200
Inversion Chr5 18383673 18946327 OsKitaake05g148200
Inversion Chr8 18704753 19285948
Inversion Chr10 19403455 19522908 OsKitaake10g143500
Inversion Chr10 19403460 19522916 OsKitaake10g143500
Inversion Chr11 29342252 29625785 OsKitaake11g244300
Inversion Chr11 29342254 29625788 OsKitaake11g244300

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 6786339 Chr3 31836493
Translocation Chr8 6786393 Chr3 31837030
Translocation Chr11 6871611 Chr8 5725786 OsKitaake08g062900
Translocation Chr9 18839868 Chr1 42410251 OsKitaake09g149600
Translocation Chr9 18840400 Chr1 42410257 OsKitaake09g149600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12625868	A-T	Hetero	INTERGENIC
SBS	Chr1	16423327	A-G	Homo	INTERGENIC
SBS	Chr1	21555976	T-C	Hetero	INTERGENIC
SBS	Chr1	39707858	T-C	Hetero	INTERGENIC
SBS	Chr1	42429496	C-T	Homo	INTERGENIC
SBS	Chr1	42771971	G-A	Homo	INTERGENIC
SBS	Chr2	15086480	G-A	Hetero	INTERGENIC
SBS	Chr2	18292456	G-A	Hetero	INTERGENIC
SBS	Chr2	31521914	A-G	Homo	INTERGENIC
SBS	Chr3	5510951	G-A	Hetero	INTERGENIC
SBS	Chr3	9674371	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g131600
SBS	Chr3	13263324	T-C	Hetero	INTERGENIC
SBS	Chr3	36595830	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g407300
SBS	Chr4	10523555	G-T	Hetero	INTERGENIC
SBS	Chr4	11236040	T-A	Hetero	INTERGENIC
SBS	Chr4	27099569	C-T	Hetero	INTERGENIC
SBS	Chr5	5692261	G-T	Homo	INTERGENIC
SBS	Chr5	5692262	C-T	Homo	INTERGENIC
SBS	Chr5	29564114	A-G	Hetero	INTERGENIC
SBS	Chr6	30830616	A-G	Hetero	INTRON
SBS	Chr7	4489792	T-C	Hetero	INTERGENIC
SBS	Chr7	8742477	G-A	Hetero	INTRON
SBS	Chr7	13944132	C-G	Hetero	INTERGENIC
SBS	Chr7	14314008	T-A	Hetero	INTRON
SBS	Chr7	24191390	T-A	Hetero	INTERGENIC
SBS	Chr7	26441638	G-A	Hetero	INTERGENIC
SBS	Chr7	27340068	T-A	Hetero	INTERGENIC
SBS	Chr7	29508943	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	6755114	A-T	Hetero	INTERGENIC
SBS	Chr8	9864444	G-A	Hetero	INTRON
SBS	Chr9	10893503	C-T	Hetero	INTERGENIC
SBS	Chr9	19313125	A-C	Hetero	INTRON
SBS	Chr10	9978926	C-T	Hetero	INTERGENIC
SBS	Chr10	12653367	G-A	Hetero	INTERGENIC
SBS	Chr10	20870609	A-C	Homo	INTERGENIC
SBS	Chr11	3766574	G-T	Homo	INTERGENIC
SBS	Chr11	12426370	G-A	Homo	INTERGENIC
SBS	Chr11	12426371	C-A	Homo	INTERGENIC
SBS	Chr12	9826111	A-G	Hetero	INTERGENIC
SBS	Chr12	13644193	A-G	Hetero	INTERGENIC
SBS	Chr12	13769323	C-A	Hetero	INTERGENIC
SBS	Chr12	16831772	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1330726	1330729	3
Deletion	Chr1	8847659	8847664	5
Deletion	Chr6	10245364	10245367	3
Deletion	Chr9	10443001	10486000	42999	3
Deletion	Chr9	11505618	11505619	1
Deletion	Chr6	17876552	17876553	1
Deletion	Chr8	19284001	19301000	16999
Deletion	Chr5	30258420	30258421	1
Deletion	Chr2	36674877	36674878	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18383663	18946322	OsKitaake05g148200
Inversion	Chr5	18383673	18946327	OsKitaake05g148200
Inversion	Chr8	18704753	19285948
Inversion	Chr10	19403455	19522908	OsKitaake10g143500
Inversion	Chr10	19403460	19522916	OsKitaake10g143500
Inversion	Chr11	29342252	29625785	OsKitaake11g244300
Inversion	Chr11	29342254	29625788	OsKitaake11g244300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes