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Mutant Information

Mutant Name	FN1014-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1014-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17328217 G-A Homo INTERGENIC
SBS Chr1 27945045 T-A Homo INTERGENIC
SBS Chr1 42606183 A-G Hetero INTERGENIC
SBS Chr3 22937135 T-A Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 10611968 G-T Hetero INTERGENIC
SBS Chr4 29156920 C-T Homo INTERGENIC
SBS Chr5 8656346 A-G Hetero INTERGENIC
SBS Chr5 20676269 C-A Hetero INTRON
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr7 17279758 G-T Hetero INTERGENIC
SBS Chr7 25908674 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g236700
SBS Chr7 25937019 T-C Hetero SPLICE_SITE_REGION
SBS Chr7 26802485 G-A Hetero INTERGENIC
SBS Chr8 5148433 A-T Hetero INTERGENIC
SBS Chr8 7743096 A-G Hetero INTERGENIC
SBS Chr8 19005596 G-T Hetero INTERGENIC
SBS Chr8 19005597 A-G Hetero INTERGENIC
SBS Chr8 25667308 A-T Homo INTERGENIC
SBS Chr8 25689616 C-T Hetero INTERGENIC
SBS Chr8 27899676 A-T Hetero INTRON
SBS Chr8 27899677 A-G Hetero INTRON
SBS Chr8 28476997 C-T Hetero INTRON
SBS Chr9 3907507 C-T Hetero INTERGENIC
SBS Chr9 12626822 C-T Hetero START_GAINED
SBS Chr9 13808675 G-A Hetero STOP_GAINED OsKitaake09g093400
SBS Chr9 14291694 T-G Homo INTERGENIC
SBS Chr10 15118424 C-T Homo INTERGENIC
SBS Chr10 19033743 T-A Hetero INTERGENIC
SBS Chr10 19033744 C-G Hetero INTERGENIC
SBS Chr10 19033745 G-C Hetero INTERGENIC
SBS Chr10 21491348 G-A Hetero UTR_3_PRIME
SBS Chr11 12106128 C-T Hetero INTERGENIC
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr11 21699857 C-A Hetero INTERGENIC
SBS Chr12 7284187 G-A Hetero INTERGENIC
SBS Chr12 7505220 A-T Homo INTERGENIC
SBS Chr12 10184341 C-T Homo INTERGENIC
SBS Chr12 18930640 A-G Homo NON_SYNONYMOUS_CODING OsKitaake12g139500

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2285858 2285860 2
Deletion Chr7 2835537 2835539 2
Deletion Chr5 9155544 9155640 96
Deletion Chr11 10125139 10125142 3
Deletion Chr3 11170026 11170028 2
Deletion Chr3 17994472 17994473 1
Deletion Chr12 18910249 18910260 11
Deletion Chr2 19414119 19414120 1
Deletion Chr10 21285001 21319000 33999 3
Deletion Chr2 24786997 24786998 1
Deletion Chr4 27280596 27280613 17 OsKitaake04g198600
Deletion Chr3 29132300 29132302 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27077297 27077300 2
Insertion Chr3 27769926 27769929 2
Insertion Chr5 14569030 14569033 2
Insertion Chr6 7890827 7890830 2
Insertion Chr11 14619329 14619333 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 1198099 1560003 OsKitaake01g013900

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5012664 Chr4 3828393
Translocation Chr3 6166834 Chr2 15970798 2
Translocation Chr3 6166836 Chr2 15969710 2
Translocation Chr6 8561507 Chr1 9746254
Translocation Chr3 14504838 Chr2 15970804 OsKitaake02g165600
Translocation Chr3 14504846 Chr2 15972716 OsKitaake02g165600
Translocation Chr2 15969443 Chr1 28873818 2
Translocation Chr2 15969705 Chr1 28873816 2
Translocation Chr4 26295218 Chr1 1198094 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17328217	G-A	Homo	INTERGENIC
SBS	Chr1	27945045	T-A	Homo	INTERGENIC
SBS	Chr1	42606183	A-G	Hetero	INTERGENIC
SBS	Chr3	22937135	T-A	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	10611968	G-T	Hetero	INTERGENIC
SBS	Chr4	29156920	C-T	Homo	INTERGENIC
SBS	Chr5	8656346	A-G	Hetero	INTERGENIC
SBS	Chr5	20676269	C-A	Hetero	INTRON
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr7	17279758	G-T	Hetero	INTERGENIC
SBS	Chr7	25908674	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g236700
SBS	Chr7	25937019	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr7	26802485	G-A	Hetero	INTERGENIC
SBS	Chr8	5148433	A-T	Hetero	INTERGENIC
SBS	Chr8	7743096	A-G	Hetero	INTERGENIC
SBS	Chr8	19005596	G-T	Hetero	INTERGENIC
SBS	Chr8	19005597	A-G	Hetero	INTERGENIC
SBS	Chr8	25667308	A-T	Homo	INTERGENIC
SBS	Chr8	25689616	C-T	Hetero	INTERGENIC
SBS	Chr8	27899676	A-T	Hetero	INTRON
SBS	Chr8	27899677	A-G	Hetero	INTRON
SBS	Chr8	28476997	C-T	Hetero	INTRON
SBS	Chr9	3907507	C-T	Hetero	INTERGENIC
SBS	Chr9	12626822	C-T	Hetero	START_GAINED
SBS	Chr9	13808675	G-A	Hetero	STOP_GAINED	OsKitaake09g093400
SBS	Chr9	14291694	T-G	Homo	INTERGENIC
SBS	Chr10	15118424	C-T	Homo	INTERGENIC
SBS	Chr10	19033743	T-A	Hetero	INTERGENIC
SBS	Chr10	19033744	C-G	Hetero	INTERGENIC
SBS	Chr10	19033745	G-C	Hetero	INTERGENIC
SBS	Chr10	21491348	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	12106128	C-T	Hetero	INTERGENIC
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr11	21699857	C-A	Hetero	INTERGENIC
SBS	Chr12	7284187	G-A	Hetero	INTERGENIC
SBS	Chr12	7505220	A-T	Homo	INTERGENIC
SBS	Chr12	10184341	C-T	Homo	INTERGENIC
SBS	Chr12	18930640	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g139500

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2285858	2285860	2
Deletion	Chr7	2835537	2835539	2
Deletion	Chr5	9155544	9155640	96
Deletion	Chr11	10125139	10125142	3
Deletion	Chr3	11170026	11170028	2
Deletion	Chr3	17994472	17994473	1
Deletion	Chr12	18910249	18910260	11
Deletion	Chr2	19414119	19414120	1
Deletion	Chr10	21285001	21319000	33999	3
Deletion	Chr2	24786997	24786998	1
Deletion	Chr4	27280596	27280613	17	OsKitaake04g198600
Deletion	Chr3	29132300	29132302	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1198099	1560003	OsKitaake01g013900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes