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Mutant Information

Mutant Name	FN1015-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1015-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 9369498 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g116100
SBS Chr2 11130858 A-G Hetero INTERGENIC
SBS Chr2 23204531 A-G Homo INTERGENIC
SBS Chr2 30395214 C-A Hetero INTERGENIC
SBS Chr2 31103653 A-G Hetero INTERGENIC
SBS Chr3 17673847 T-C Homo INTERGENIC
SBS Chr3 21333270 C-T Hetero INTERGENIC
SBS Chr3 29983450 G-A Homo INTERGENIC
SBS Chr3 35869671 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g395100
SBS Chr3 36616106 T-A Hetero INTERGENIC
SBS Chr4 27088460 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g196800
SBS Chr5 3235830 G-A Hetero INTERGENIC
SBS Chr5 7477644 T-A Hetero INTERGENIC
SBS Chr5 24931050 G-A Homo INTERGENIC
SBS Chr5 26270185 C-A Hetero INTERGENIC
SBS Chr5 27510998 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 6118263 G-T Hetero INTRON
SBS Chr6 11236413 T-A Homo UTR_5_PRIME
SBS Chr6 11236414 G-A Homo UTR_5_PRIME
SBS Chr6 14748414 A-G Homo INTERGENIC
SBS Chr7 9346692 C-T Hetero INTERGENIC
SBS Chr7 17723667 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g143900
SBS Chr8 1275832 C-T Hetero INTERGENIC
SBS Chr8 13432045 T-A Hetero INTERGENIC
SBS Chr8 13432046 C-T Hetero INTERGENIC
SBS Chr8 24441093 A-G Hetero INTERGENIC
SBS Chr9 7526639 A-T Homo STOP_GAINED OsKitaake09g042700
SBS Chr9 9692588 A-C Homo INTRON
SBS Chr9 16044118 A-G Hetero INTERGENIC
SBS Chr10 1087175 C-T Homo INTERGENIC
SBS Chr11 9032976 T-A Hetero INTERGENIC
SBS Chr11 17425369 A-G Hetero INTERGENIC
SBS Chr11 25731052 C-A Hetero INTERGENIC
SBS Chr12 487071 G-A Homo START_GAINED
SBS Chr12 6758607 T-C Homo INTERGENIC
SBS Chr12 20102019 C-A Hetero INTERGENIC
SBS Chr12 20698019 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g161300
SBS Chr12 22993212 T-C Hetero INTRON
SBS Chr12 23219282 C-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 6927124 6927133 9
Deletion Chr7 7863181 7863182 1 OsKitaake07g086500
Deletion Chr6 20199508 20199524 16
Deletion Chr7 24772733 24772743 10
Deletion Chr1 25900001 26227000 326999 40
Deletion Chr1 26233001 26264000 30999 4
Deletion Chr11 26327683 26327685 2
Deletion Chr6 29336001 29343000 6999 2
Deletion Chr6 29354001 29409000 54999 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14414701 14414704 2
Insertion Chr2 22124254 22124261 6
Insertion Chr7 23502520 23502522 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 73655 366524 2
Inversion Chr1 73663 366525 2
Inversion Chr1 26263741 26781428
Inversion Chr1 26503888 26780946

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1304222 Chr1 26780947
Translocation Chr8 1304226 Chr1 26781424
Translocation Chr10 3231504 Chr3 8330341

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	9369498	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g116100
SBS	Chr2	11130858	A-G	Hetero	INTERGENIC
SBS	Chr2	23204531	A-G	Homo	INTERGENIC
SBS	Chr2	30395214	C-A	Hetero	INTERGENIC
SBS	Chr2	31103653	A-G	Hetero	INTERGENIC
SBS	Chr3	17673847	T-C	Homo	INTERGENIC
SBS	Chr3	21333270	C-T	Hetero	INTERGENIC
SBS	Chr3	29983450	G-A	Homo	INTERGENIC
SBS	Chr3	35869671	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g395100
SBS	Chr3	36616106	T-A	Hetero	INTERGENIC
SBS	Chr4	27088460	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g196800
SBS	Chr5	3235830	G-A	Hetero	INTERGENIC
SBS	Chr5	7477644	T-A	Hetero	INTERGENIC
SBS	Chr5	24931050	G-A	Homo	INTERGENIC
SBS	Chr5	26270185	C-A	Hetero	INTERGENIC
SBS	Chr5	27510998	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	6118263	G-T	Hetero	INTRON
SBS	Chr6	11236413	T-A	Homo	UTR_5_PRIME
SBS	Chr6	11236414	G-A	Homo	UTR_5_PRIME
SBS	Chr6	14748414	A-G	Homo	INTERGENIC
SBS	Chr7	9346692	C-T	Hetero	INTERGENIC
SBS	Chr7	17723667	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g143900
SBS	Chr8	1275832	C-T	Hetero	INTERGENIC
SBS	Chr8	13432045	T-A	Hetero	INTERGENIC
SBS	Chr8	13432046	C-T	Hetero	INTERGENIC
SBS	Chr8	24441093	A-G	Hetero	INTERGENIC
SBS	Chr9	7526639	A-T	Homo	STOP_GAINED	OsKitaake09g042700
SBS	Chr9	9692588	A-C	Homo	INTRON
SBS	Chr9	16044118	A-G	Hetero	INTERGENIC
SBS	Chr10	1087175	C-T	Homo	INTERGENIC
SBS	Chr11	9032976	T-A	Hetero	INTERGENIC
SBS	Chr11	17425369	A-G	Hetero	INTERGENIC
SBS	Chr11	25731052	C-A	Hetero	INTERGENIC
SBS	Chr12	487071	G-A	Homo	START_GAINED
SBS	Chr12	6758607	T-C	Homo	INTERGENIC
SBS	Chr12	20102019	C-A	Hetero	INTERGENIC
SBS	Chr12	20698019	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g161300
SBS	Chr12	22993212	T-C	Hetero	INTRON
SBS	Chr12	23219282	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	6927124	6927133	9
Deletion	Chr7	7863181	7863182	1	OsKitaake07g086500
Deletion	Chr6	20199508	20199524	16
Deletion	Chr7	24772733	24772743	10
Deletion	Chr1	25900001	26227000	326999	40
Deletion	Chr1	26233001	26264000	30999	4
Deletion	Chr11	26327683	26327685	2
Deletion	Chr6	29336001	29343000	6999	2
Deletion	Chr6	29354001	29409000	54999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	73655	366524	2
Inversion	Chr1	73663	366525	2
Inversion	Chr1	26263741	26781428
Inversion	Chr1	26503888	26780946

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes