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| Mutant Information |
|---|
| Mutant Name | FN1018-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1018-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3304715 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13355794 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 19497568 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27838605 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 31339704 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1063981 | C-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 10597095 | T-A | Homo | INTRON | |
| SBS | Chr3 | 10611016 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 12123615 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g164200 |
| SBS | Chr3 | 24916889 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24918273 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g265200 |
| SBS | Chr3 | 24918275 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g265200 |
| SBS | Chr4 | 12375476 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 12375477 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21717693 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27326153 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4480649 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g052000 |
| SBS | Chr5 | 4480650 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 12646761 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 25005669 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1811923 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2573418 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11708301 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 17906667 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3115987 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14690826 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14690827 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15526594 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18658813 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6645138 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7339045 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11295591 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 19973149 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 29111 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 3617940 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 8230763 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25261340 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5065930 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17386245 | C-T | Hetero | UTR_5_PRIME |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 3725001 | 3751000 | 25999 | 3 |
| Deletion | Chr2 | 6441813 | 6441817 | 4 | |
| Deletion | Chr1 | 7930784 | 7930789 | 5 | OsKitaake01g099400 |
| Deletion | Chr5 | 11926067 | 11926069 | 2 | |
| Deletion | Chr12 | 13871252 | 13871255 | 3 | |
| Deletion | Chr2 | 14038402 | 14038414 | 12 | |
| Deletion | Chr8 | 14262653 | 14262662 | 9 | |
| Deletion | Chr5 | 15089281 | 15089296 | 15 | |
| Deletion | Chr9 | 17832570 | 17832594 | 24 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 2803976 | 2803979 | 2 | |
| Insertion | Chr3 | 16744382 | 16744384 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 14759530 | 15018024 | |
| Inversion | Chr6 | 14759533 | 15018022 | |
| Inversion | Chr10 | 16359078 | 17239478 | OsKitaake10g110400 |
| Inversion | Chr10 | 16359351 | 17239486 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 23927358 | Chr10 | 19376081 | |
| Translocation | Chr12 | 24580381 | Chr6 | 13939654 | OsKitaake12g199000 |
| Translocation | Chr12 | 24580384 | Chr6 | 13939477 | OsKitaake12g199000 |