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Mutant Information

Mutant Name	FN1020-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1020-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3130916 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g040800
SBS Chr1 14812286 G-A Hetero INTERGENIC
SBS Chr1 19690639 C-T Hetero INTERGENIC
SBS Chr1 39129063 C-T Hetero INTERGENIC
SBS Chr1 39129064 C-T Hetero INTERGENIC
SBS Chr1 41082072 C-G Hetero INTERGENIC
SBS Chr2 1815632 G-A Hetero UTR_3_PRIME
SBS Chr2 33554344 G-T Homo SYNONYMOUS_CODING
SBS Chr3 263607 G-A Hetero INTERGENIC
SBS Chr3 23255832 C-T Homo INTERGENIC
SBS Chr3 24311277 A-T Hetero INTERGENIC
SBS Chr3 26912118 C-G Hetero INTERGENIC
SBS Chr4 22629693 G-A Hetero INTERGENIC
SBS Chr4 26207828 G-A Homo INTERGENIC
SBS Chr4 28055255 G-A Hetero INTERGENIC
SBS Chr4 34576801 A-G Hetero INTERGENIC
SBS Chr5 5812203 G-A Hetero INTERGENIC
SBS Chr5 9571498 A-G Hetero INTERGENIC
SBS Chr5 26601189 A-T Hetero INTERGENIC
SBS Chr5 27254734 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 29655325 T-A Hetero INTERGENIC
SBS Chr6 8279427 G-A Hetero INTERGENIC
SBS Chr6 22475790 C-T Homo INTERGENIC
SBS Chr7 8546290 G-A Hetero INTERGENIC
SBS Chr7 11343750 T-C Hetero INTERGENIC
SBS Chr7 16543292 C-A Hetero INTERGENIC
SBS Chr7 18821330 C-A Hetero INTERGENIC
SBS Chr7 26639505 G-A Hetero INTERGENIC
SBS Chr8 6013167 T-C Hetero INTRON
SBS Chr9 5727120 G-A Hetero INTERGENIC
SBS Chr9 6641916 C-T Hetero INTERGENIC
SBS Chr9 7574384 T-G Hetero INTERGENIC
SBS Chr9 11245005 G-A Hetero INTERGENIC
SBS Chr10 9992433 G-T Hetero INTERGENIC
SBS Chr10 9992435 G-C Hetero INTERGENIC
SBS Chr11 3960660 T-C Homo INTERGENIC
SBS Chr11 8548135 T-G Homo INTERGENIC
SBS Chr11 20944441 C-T Hetero INTERGENIC
SBS Chr12 2120056 A-T Hetero INTERGENIC
SBS Chr12 12130196 T-C Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 517671 517691 20 OsKitaake03g008300
Deletion Chr12 3994001 4012000 17999
Deletion Chr9 5376716 5376721 5 OsKitaake09g030800
Deletion Chr8 6330160 6330161 1
Deletion Chr9 6975428 6975431 3
Deletion Chr7 9774693 9774703 10
Deletion Chr6 10341737 10341743 6
Deletion Chr4 11268495 11268498 3
Deletion Chr5 13312556 13312560 4
Deletion Chr11 14887142 14887170 28
Deletion Chr1 15271084 15271086 2
Deletion Chr2 16108567 16108583 16
Deletion Chr8 17067845 17067853 8
Deletion Chr5 18237806 18237830 24
Deletion Chr8 19312271 19312283 12
Deletion Chr2 21938667 21938679 12
Deletion Chr11 23729000 23729024 24
Deletion Chr12 26606644 26606656 12
Deletion Chr5 29655036 29655042 6
Deletion Chr3 34281487 34281492 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 2768573 2768576 2
Insertion Chr9 553914 553917 2

Inversions: 13

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 11777042 11777197
Inversion Chr4 11808736 11808918 OsKitaake04g057400
Inversion Chr4 13961659 13962135 OsKitaake04g067000
Inversion Chr7 20810229 20810466 OsKitaake07g171400
Inversion Chr1 21529260 21529371 OsKitaake01g207800
Inversion Chr7 22743421 22743680 OsKitaake07g194950
Inversion Chr6 25231258 25231420
Inversion Chr8 28521497 28521716 OsKitaake08g242300
Inversion Chr2 31297995 31298249 OsKitaake02g320700
Inversion Chr3 31392571 31392932 OsKitaake03g331001
Inversion Chr4 33812881 33813175 OsKitaake04g281300
Inversion Chr1 38815728 38815841 OsKitaake01g415800
Inversion Chr1 43931368 43931674 OsKitaake01g489800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 13893210 Chr2 17215831

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3130916	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g040800
SBS	Chr1	14812286	G-A	Hetero	INTERGENIC
SBS	Chr1	19690639	C-T	Hetero	INTERGENIC
SBS	Chr1	39129063	C-T	Hetero	INTERGENIC
SBS	Chr1	39129064	C-T	Hetero	INTERGENIC
SBS	Chr1	41082072	C-G	Hetero	INTERGENIC
SBS	Chr2	1815632	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	33554344	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	263607	G-A	Hetero	INTERGENIC
SBS	Chr3	23255832	C-T	Homo	INTERGENIC
SBS	Chr3	24311277	A-T	Hetero	INTERGENIC
SBS	Chr3	26912118	C-G	Hetero	INTERGENIC
SBS	Chr4	22629693	G-A	Hetero	INTERGENIC
SBS	Chr4	26207828	G-A	Homo	INTERGENIC
SBS	Chr4	28055255	G-A	Hetero	INTERGENIC
SBS	Chr4	34576801	A-G	Hetero	INTERGENIC
SBS	Chr5	5812203	G-A	Hetero	INTERGENIC
SBS	Chr5	9571498	A-G	Hetero	INTERGENIC
SBS	Chr5	26601189	A-T	Hetero	INTERGENIC
SBS	Chr5	27254734	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29655325	T-A	Hetero	INTERGENIC
SBS	Chr6	8279427	G-A	Hetero	INTERGENIC
SBS	Chr6	22475790	C-T	Homo	INTERGENIC
SBS	Chr7	8546290	G-A	Hetero	INTERGENIC
SBS	Chr7	11343750	T-C	Hetero	INTERGENIC
SBS	Chr7	16543292	C-A	Hetero	INTERGENIC
SBS	Chr7	18821330	C-A	Hetero	INTERGENIC
SBS	Chr7	26639505	G-A	Hetero	INTERGENIC
SBS	Chr8	6013167	T-C	Hetero	INTRON
SBS	Chr9	5727120	G-A	Hetero	INTERGENIC
SBS	Chr9	6641916	C-T	Hetero	INTERGENIC
SBS	Chr9	7574384	T-G	Hetero	INTERGENIC
SBS	Chr9	11245005	G-A	Hetero	INTERGENIC
SBS	Chr10	9992433	G-T	Hetero	INTERGENIC
SBS	Chr10	9992435	G-C	Hetero	INTERGENIC
SBS	Chr11	3960660	T-C	Homo	INTERGENIC
SBS	Chr11	8548135	T-G	Homo	INTERGENIC
SBS	Chr11	20944441	C-T	Hetero	INTERGENIC
SBS	Chr12	2120056	A-T	Hetero	INTERGENIC
SBS	Chr12	12130196	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	517671	517691	20	OsKitaake03g008300
Deletion	Chr12	3994001	4012000	17999
Deletion	Chr9	5376716	5376721	5	OsKitaake09g030800
Deletion	Chr8	6330160	6330161	1
Deletion	Chr9	6975428	6975431	3
Deletion	Chr7	9774693	9774703	10
Deletion	Chr6	10341737	10341743	6
Deletion	Chr4	11268495	11268498	3
Deletion	Chr5	13312556	13312560	4
Deletion	Chr11	14887142	14887170	28
Deletion	Chr1	15271084	15271086	2
Deletion	Chr2	16108567	16108583	16
Deletion	Chr8	17067845	17067853	8
Deletion	Chr5	18237806	18237830	24
Deletion	Chr8	19312271	19312283	12
Deletion	Chr2	21938667	21938679	12
Deletion	Chr11	23729000	23729024	24
Deletion	Chr12	26606644	26606656	12
Deletion	Chr5	29655036	29655042	6
Deletion	Chr3	34281487	34281492	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11777042	11777197
Inversion	Chr4	11808736	11808918	OsKitaake04g057400
Inversion	Chr4	13961659	13962135	OsKitaake04g067000
Inversion	Chr7	20810229	20810466	OsKitaake07g171400
Inversion	Chr1	21529260	21529371	OsKitaake01g207800
Inversion	Chr7	22743421	22743680	OsKitaake07g194950
Inversion	Chr6	25231258	25231420
Inversion	Chr8	28521497	28521716	OsKitaake08g242300
Inversion	Chr2	31297995	31298249	OsKitaake02g320700
Inversion	Chr3	31392571	31392932	OsKitaake03g331001
Inversion	Chr4	33812881	33813175	OsKitaake04g281300
Inversion	Chr1	38815728	38815841	OsKitaake01g415800
Inversion	Chr1	43931368	43931674	OsKitaake01g489800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes