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Mutant Information

Mutant Name	FN1022-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1022-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9874353 T-A Hetero INTERGENIC
SBS Chr1 15250718 A-G Hetero UTR_3_PRIME
SBS Chr1 18690731 G-C Hetero INTRON
SBS Chr1 19556689 A-T Hetero INTERGENIC
SBS Chr1 26397832 C-T Homo INTERGENIC
SBS Chr2 3652809 G-A Hetero INTERGENIC
SBS Chr2 7197236 G-A Hetero INTERGENIC
SBS Chr2 11740337 T-G Hetero INTERGENIC
SBS Chr2 31075700 C-T Hetero UTR_5_PRIME
SBS Chr2 34407551 C-G Hetero INTERGENIC
SBS Chr2 35709288 G-A Hetero INTERGENIC
SBS Chr3 2513970 G-T Hetero INTERGENIC
SBS Chr3 13700938 G-A Homo INTERGENIC
SBS Chr3 19925342 G-A Hetero INTERGENIC
SBS Chr3 28023206 T-C Hetero INTERGENIC
SBS Chr4 9724496 G-C Hetero INTERGENIC
SBS Chr4 10102086 A-G Hetero INTERGENIC
SBS Chr4 14341142 A-C Hetero INTERGENIC
SBS Chr4 16746777 T-A Hetero UTR_3_PRIME
SBS Chr4 21877456 T-A Hetero INTERGENIC
SBS Chr4 22248440 C-T Hetero INTERGENIC
SBS Chr4 23224840 T-A Hetero INTERGENIC
SBS Chr4 23620010 T-A Hetero INTERGENIC
SBS Chr4 25171628 G-A Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr4 36257739 C-G Hetero UTR_5_PRIME
SBS Chr5 6940221 A-C Hetero INTERGENIC
SBS Chr5 9944127 T-C Hetero INTERGENIC
SBS Chr5 14294412 T-A Hetero UTR_3_PRIME
SBS Chr5 18651482 C-T Hetero INTERGENIC
SBS Chr5 21069203 A-T Hetero INTERGENIC
SBS Chr5 21583500 C-T Hetero INTERGENIC
SBS Chr5 28402699 C-T Hetero INTERGENIC
SBS Chr6 8209127 G-A Hetero INTERGENIC
SBS Chr6 13893721 A-T Hetero INTERGENIC
SBS Chr7 4129186 A-T Hetero INTERGENIC
SBS Chr7 18156539 T-C Hetero INTERGENIC
SBS Chr7 20071960 C-T Hetero INTERGENIC
SBS Chr7 20312635 T-A Hetero INTERGENIC
SBS Chr7 23358980 G-C Hetero INTERGENIC
SBS Chr8 1778474 C-T Hetero INTRON
SBS Chr8 4167429 T-C Hetero UTR_3_PRIME
SBS Chr8 4428019 A-T Hetero INTRON
SBS Chr8 10671826 T-A Hetero INTERGENIC
SBS Chr8 11075843 G-T Hetero INTERGENIC
SBS Chr8 14145673 G-C Hetero UTR_3_PRIME
SBS Chr8 24253958 C-A Hetero INTERGENIC
SBS Chr8 27202823 T-C Hetero INTRON
SBS Chr8 27481074 T-C Hetero INTRON
SBS Chr9 3438035 G-A Hetero INTERGENIC
SBS Chr9 20080931 G-A Hetero INTERGENIC
SBS Chr10 11864405 G-C Hetero INTERGENIC
SBS Chr10 19696780 G-A Hetero INTERGENIC
SBS Chr11 507775 G-A Hetero INTERGENIC
SBS Chr11 4326964 A-T Hetero INTERGENIC
SBS Chr11 7598077 A-T Hetero INTERGENIC
SBS Chr11 12965584 G-C Hetero INTERGENIC
SBS Chr11 19286149 G-A Hetero INTERGENIC
SBS Chr11 28699464 T-G Hetero INTERGENIC
SBS Chr12 11061807 G-T Homo INTERGENIC
SBS Chr12 12189245 G-A Hetero INTERGENIC
SBS Chr12 12640085 T-A Hetero INTERGENIC
SBS Chr12 15174005 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 678777 678780 3
Deletion Chr1 3203335 3203336 1
Deletion Chr6 6770631 6770633 2
Deletion Chr4 9882054 9882055 1
Deletion Chr9 10232055 10232057 2
Deletion Chr10 14550001 14935000 384999 25
Deletion Chr1 29649171 29649172 1
Deletion Chr4 31182314 31182315 1
Deletion Chr2 32344563 32344565 2
Deletion Chr1 32417287 32417302 15

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24602667 24602670 2
Insertion Chr1 30371996 30371999 2
Insertion Chr1 40877936 40877939 2
Insertion Chr3 3341824 3341827 2
Insertion Chr3 22980509 22980513 3
Insertion Chr4 375455 375458 2
Insertion Chr9 5319037 5319040 2
Insertion Chr12 6311507 6311510 2
Insertion Chr12 24724356 24724359 2
Insertion Chr2 10324700 10324702 1
Insertion Chr8 2510172 2510174 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2064396 2092329 OsKitaake08g024500
Inversion Chr8 2080793 3002928 OsKitaake08g024400
Inversion Chr8 2532708 3002936
Inversion Chr10 14538705 15407352 2
Inversion Chr2 21371980 21584185
Inversion Chr2 21392571 21583514 OsKitaake02g206500

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2064391 Chr1 25323995 OsKitaake01g245201
Translocation Chr4 13886333 Chr2 21371430
Translocation Chr4 13886338 Chr2 21371840
Translocation Chr10 14538708 Chr2 17862466 OsKitaake10g091100
Translocation Chr10 14550735 Chr2 21392577 OsKitaake02g206500
Translocation Chr10 14934019 Chr2 21583517 OsKitaake10g093300
Translocation Chr10 15407362 Chr2 21584176 OsKitaake10g098900
Translocation Chr5 22533192 Chr1 29042429 2
Translocation Chr5 22533193 Chr1 29043422 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9874353	T-A	Hetero	INTERGENIC
SBS	Chr1	15250718	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	18690731	G-C	Hetero	INTRON
SBS	Chr1	19556689	A-T	Hetero	INTERGENIC
SBS	Chr1	26397832	C-T	Homo	INTERGENIC
SBS	Chr2	3652809	G-A	Hetero	INTERGENIC
SBS	Chr2	7197236	G-A	Hetero	INTERGENIC
SBS	Chr2	11740337	T-G	Hetero	INTERGENIC
SBS	Chr2	31075700	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	34407551	C-G	Hetero	INTERGENIC
SBS	Chr2	35709288	G-A	Hetero	INTERGENIC
SBS	Chr3	2513970	G-T	Hetero	INTERGENIC
SBS	Chr3	13700938	G-A	Homo	INTERGENIC
SBS	Chr3	19925342	G-A	Hetero	INTERGENIC
SBS	Chr3	28023206	T-C	Hetero	INTERGENIC
SBS	Chr4	9724496	G-C	Hetero	INTERGENIC
SBS	Chr4	10102086	A-G	Hetero	INTERGENIC
SBS	Chr4	14341142	A-C	Hetero	INTERGENIC
SBS	Chr4	16746777	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	21877456	T-A	Hetero	INTERGENIC
SBS	Chr4	22248440	C-T	Hetero	INTERGENIC
SBS	Chr4	23224840	T-A	Hetero	INTERGENIC
SBS	Chr4	23620010	T-A	Hetero	INTERGENIC
SBS	Chr4	25171628	G-A	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr4	36257739	C-G	Hetero	UTR_5_PRIME
SBS	Chr5	6940221	A-C	Hetero	INTERGENIC
SBS	Chr5	9944127	T-C	Hetero	INTERGENIC
SBS	Chr5	14294412	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	18651482	C-T	Hetero	INTERGENIC
SBS	Chr5	21069203	A-T	Hetero	INTERGENIC
SBS	Chr5	21583500	C-T	Hetero	INTERGENIC
SBS	Chr5	28402699	C-T	Hetero	INTERGENIC
SBS	Chr6	8209127	G-A	Hetero	INTERGENIC
SBS	Chr6	13893721	A-T	Hetero	INTERGENIC
SBS	Chr7	4129186	A-T	Hetero	INTERGENIC
SBS	Chr7	18156539	T-C	Hetero	INTERGENIC
SBS	Chr7	20071960	C-T	Hetero	INTERGENIC
SBS	Chr7	20312635	T-A	Hetero	INTERGENIC
SBS	Chr7	23358980	G-C	Hetero	INTERGENIC
SBS	Chr8	1778474	C-T	Hetero	INTRON
SBS	Chr8	4167429	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	4428019	A-T	Hetero	INTRON
SBS	Chr8	10671826	T-A	Hetero	INTERGENIC
SBS	Chr8	11075843	G-T	Hetero	INTERGENIC
SBS	Chr8	14145673	G-C	Hetero	UTR_3_PRIME
SBS	Chr8	24253958	C-A	Hetero	INTERGENIC
SBS	Chr8	27202823	T-C	Hetero	INTRON
SBS	Chr8	27481074	T-C	Hetero	INTRON
SBS	Chr9	3438035	G-A	Hetero	INTERGENIC
SBS	Chr9	20080931	G-A	Hetero	INTERGENIC
SBS	Chr10	11864405	G-C	Hetero	INTERGENIC
SBS	Chr10	19696780	G-A	Hetero	INTERGENIC
SBS	Chr11	507775	G-A	Hetero	INTERGENIC
SBS	Chr11	4326964	A-T	Hetero	INTERGENIC
SBS	Chr11	7598077	A-T	Hetero	INTERGENIC
SBS	Chr11	12965584	G-C	Hetero	INTERGENIC
SBS	Chr11	19286149	G-A	Hetero	INTERGENIC
SBS	Chr11	28699464	T-G	Hetero	INTERGENIC
SBS	Chr12	11061807	G-T	Homo	INTERGENIC
SBS	Chr12	12189245	G-A	Hetero	INTERGENIC
SBS	Chr12	12640085	T-A	Hetero	INTERGENIC
SBS	Chr12	15174005	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	678777	678780	3
Deletion	Chr1	3203335	3203336	1
Deletion	Chr6	6770631	6770633	2
Deletion	Chr4	9882054	9882055	1
Deletion	Chr9	10232055	10232057	2
Deletion	Chr10	14550001	14935000	384999	25
Deletion	Chr1	29649171	29649172	1
Deletion	Chr4	31182314	31182315	1
Deletion	Chr2	32344563	32344565	2
Deletion	Chr1	32417287	32417302	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2064396	2092329	OsKitaake08g024500
Inversion	Chr8	2080793	3002928	OsKitaake08g024400
Inversion	Chr8	2532708	3002936
Inversion	Chr10	14538705	15407352	2
Inversion	Chr2	21371980	21584185
Inversion	Chr2	21392571	21583514	OsKitaake02g206500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes