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Mutant Information

Mutant Name	FN1023-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1023-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12280646 C-T Hetero INTERGENIC
SBS Chr2 2396251 C-T Hetero INTERGENIC
SBS Chr2 4568867 A-G Hetero INTERGENIC
SBS Chr2 15544685 T-A Hetero INTERGENIC
SBS Chr2 18082471 A-C Homo INTERGENIC
SBS Chr2 35165322 C-G Hetero INTRON
SBS Chr3 3833676 C-T Hetero INTERGENIC
SBS Chr3 4771184 C-A Hetero INTERGENIC
SBS Chr3 7723529 C-T Hetero INTERGENIC
SBS Chr3 18584634 G-A Hetero INTERGENIC
SBS Chr3 18857052 C-G Hetero INTERGENIC
SBS Chr3 29370977 T-A Hetero INTERGENIC
SBS Chr3 30055520 G-A Hetero INTERGENIC
SBS Chr3 33045131 G-A Hetero UTR_3_PRIME
SBS Chr3 35942571 C-T Hetero INTERGENIC
SBS Chr3 36561527 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g406800
SBS Chr3 37213042 A-G Hetero INTERGENIC
SBS Chr4 9014606 C-T Hetero INTERGENIC
SBS Chr4 13303886 C-T Hetero INTERGENIC
SBS Chr4 16968698 C-T Hetero INTERGENIC
SBS Chr4 18648464 G-A Hetero INTERGENIC
SBS Chr4 19269043 G-C Hetero INTERGENIC
SBS Chr4 19406260 T-G Hetero INTRON
SBS Chr4 23159732 T-C Hetero INTERGENIC
SBS Chr4 24760830 G-T Hetero INTERGENIC
SBS Chr4 29142275 G-A Homo INTERGENIC
SBS Chr5 21013676 G-T Hetero INTERGENIC
SBS Chr5 22179482 C-T Hetero INTERGENIC
SBS Chr5 22179484 C-T Hetero INTERGENIC
SBS Chr5 26468724 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g234700
SBS Chr6 19610103 G-A Homo INTERGENIC
SBS Chr6 21043710 G-A Hetero INTERGENIC
SBS Chr6 24226964 A-T Hetero INTERGENIC
SBS Chr7 676754 C-T Homo INTRON
SBS Chr7 15864342 C-G Homo INTRON
SBS Chr7 17719890 A-G Hetero INTRON
SBS Chr7 19398419 T-A Hetero INTERGENIC
SBS Chr8 20451398 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g151600
SBS Chr9 2682988 T-C Homo INTRON
SBS Chr9 2683015 T-C Homo INTRON
SBS Chr9 2734596 T-G Homo INTERGENIC
SBS Chr9 12803227 A-T Hetero INTERGENIC
SBS Chr9 17957780 C-T Homo INTERGENIC
SBS Chr9 22642519 G-A Hetero INTERGENIC
SBS Chr10 2373423 A-G Hetero INTERGENIC
SBS Chr10 5519941 G-T Hetero INTERGENIC
SBS Chr10 10206520 A-T Hetero INTERGENIC
SBS Chr10 13594700 G-T Hetero INTERGENIC
SBS Chr12 15623117 A-G Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7106 352
Deletion Chr2 673743 673745 2
Deletion Chr12 1043001 1115000 71999 7
Deletion Chr12 1208705 1208713 8 OsKitaake12g017300
Deletion Chr7 1716916 1716917 1
Deletion Chr1 3741298 3741299 1
Deletion Chr1 4283543 4283547 4
Deletion Chr1 4694043 4694044 1
Deletion Chr12 4896004 4896009 5
Deletion Chr7 5656390 5656392 2
Deletion Chr9 6518194 6518196 2
Deletion Chr7 11349752 11349758 6
Deletion Chr1 13826960 13826961 1
Deletion Chr7 14284885 14284893 8
Deletion Chr7 14633121 14633125 4
Deletion Chr4 15667230 15667232 2
Deletion Chr6 16506107 16506115 8
Deletion Chr2 18696280 18696289 9
Deletion Chr3 19602005 19602012 7
Deletion Chr11 22537798 22537805 7
Deletion Chr5 22768781 22768784 3
Deletion Chr2 24527205 24527212 7
Deletion Chr2 27890623 27890631 8
Deletion Chr11 27936906 27936907 1
Deletion Chr7 28769702 28769706 4
Deletion Chr7 29539001 29659000 119999 13
Deletion Chr2 34357869 34357875 6
Deletion Chr1 34428676 34428678 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9342174 9342177 2
Insertion Chr6 16256348 16256350 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1113266 Chr2 5742148
Translocation Chr12 1113585 Chr2 5742146
Translocation Chr12 3914697 Chr2 33380088 OsKitaake02g344200
Translocation Chr12 3915138 Chr2 33386030 OsKitaake02g344400
Translocation Chr11 6287129 Chr7 21118030
Translocation Chr11 6295033 Chr7 21118023

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12280646	C-T	Hetero	INTERGENIC
SBS	Chr2	2396251	C-T	Hetero	INTERGENIC
SBS	Chr2	4568867	A-G	Hetero	INTERGENIC
SBS	Chr2	15544685	T-A	Hetero	INTERGENIC
SBS	Chr2	18082471	A-C	Homo	INTERGENIC
SBS	Chr2	35165322	C-G	Hetero	INTRON
SBS	Chr3	3833676	C-T	Hetero	INTERGENIC
SBS	Chr3	4771184	C-A	Hetero	INTERGENIC
SBS	Chr3	7723529	C-T	Hetero	INTERGENIC
SBS	Chr3	18584634	G-A	Hetero	INTERGENIC
SBS	Chr3	18857052	C-G	Hetero	INTERGENIC
SBS	Chr3	29370977	T-A	Hetero	INTERGENIC
SBS	Chr3	30055520	G-A	Hetero	INTERGENIC
SBS	Chr3	33045131	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	35942571	C-T	Hetero	INTERGENIC
SBS	Chr3	36561527	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g406800
SBS	Chr3	37213042	A-G	Hetero	INTERGENIC
SBS	Chr4	9014606	C-T	Hetero	INTERGENIC
SBS	Chr4	13303886	C-T	Hetero	INTERGENIC
SBS	Chr4	16968698	C-T	Hetero	INTERGENIC
SBS	Chr4	18648464	G-A	Hetero	INTERGENIC
SBS	Chr4	19269043	G-C	Hetero	INTERGENIC
SBS	Chr4	19406260	T-G	Hetero	INTRON
SBS	Chr4	23159732	T-C	Hetero	INTERGENIC
SBS	Chr4	24760830	G-T	Hetero	INTERGENIC
SBS	Chr4	29142275	G-A	Homo	INTERGENIC
SBS	Chr5	21013676	G-T	Hetero	INTERGENIC
SBS	Chr5	22179482	C-T	Hetero	INTERGENIC
SBS	Chr5	22179484	C-T	Hetero	INTERGENIC
SBS	Chr5	26468724	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g234700
SBS	Chr6	19610103	G-A	Homo	INTERGENIC
SBS	Chr6	21043710	G-A	Hetero	INTERGENIC
SBS	Chr6	24226964	A-T	Hetero	INTERGENIC
SBS	Chr7	676754	C-T	Homo	INTRON
SBS	Chr7	15864342	C-G	Homo	INTRON
SBS	Chr7	17719890	A-G	Hetero	INTRON
SBS	Chr7	19398419	T-A	Hetero	INTERGENIC
SBS	Chr8	20451398	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g151600
SBS	Chr9	2682988	T-C	Homo	INTRON
SBS	Chr9	2683015	T-C	Homo	INTRON
SBS	Chr9	2734596	T-G	Homo	INTERGENIC
SBS	Chr9	12803227	A-T	Hetero	INTERGENIC
SBS	Chr9	17957780	C-T	Homo	INTERGENIC
SBS	Chr9	22642519	G-A	Hetero	INTERGENIC
SBS	Chr10	2373423	A-G	Hetero	INTERGENIC
SBS	Chr10	5519941	G-T	Hetero	INTERGENIC
SBS	Chr10	10206520	A-T	Hetero	INTERGENIC
SBS	Chr10	13594700	G-T	Hetero	INTERGENIC
SBS	Chr12	15623117	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7106	352
Deletion	Chr2	673743	673745	2
Deletion	Chr12	1043001	1115000	71999	7
Deletion	Chr12	1208705	1208713	8	OsKitaake12g017300
Deletion	Chr7	1716916	1716917	1
Deletion	Chr1	3741298	3741299	1
Deletion	Chr1	4283543	4283547	4
Deletion	Chr1	4694043	4694044	1
Deletion	Chr12	4896004	4896009	5
Deletion	Chr7	5656390	5656392	2
Deletion	Chr9	6518194	6518196	2
Deletion	Chr7	11349752	11349758	6
Deletion	Chr1	13826960	13826961	1
Deletion	Chr7	14284885	14284893	8
Deletion	Chr7	14633121	14633125	4
Deletion	Chr4	15667230	15667232	2
Deletion	Chr6	16506107	16506115	8
Deletion	Chr2	18696280	18696289	9
Deletion	Chr3	19602005	19602012	7
Deletion	Chr11	22537798	22537805	7
Deletion	Chr5	22768781	22768784	3
Deletion	Chr2	24527205	24527212	7
Deletion	Chr2	27890623	27890631	8
Deletion	Chr11	27936906	27936907	1
Deletion	Chr7	28769702	28769706	4
Deletion	Chr7	29539001	29659000	119999	13
Deletion	Chr2	34357869	34357875	6
Deletion	Chr1	34428676	34428678	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1113266	Chr2	5742148
Translocation	Chr12	1113585	Chr2	5742146
Translocation	Chr12	3914697	Chr2	33380088	OsKitaake02g344200
Translocation	Chr12	3915138	Chr2	33386030	OsKitaake02g344400
Translocation	Chr11	6287129	Chr7	21118030
Translocation	Chr11	6295033	Chr7	21118023

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes