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Mutant Information

Mutant Name	FN1024-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1024-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 609320 T-A Hetero INTERGENIC
SBS Chr1 5475822 G-C Hetero SYNONYMOUS_CODING
SBS Chr1 16596861 T-C Homo INTERGENIC
SBS Chr1 17902279 T-C Homo INTERGENIC
SBS Chr1 18509122 C-G Homo INTERGENIC
SBS Chr1 18734117 A-G Homo INTERGENIC
SBS Chr2 7440579 G-A Homo INTERGENIC
SBS Chr2 13810341 T-C Hetero INTERGENIC
SBS Chr2 16774279 G-A Hetero INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 3431278 C-A Homo INTERGENIC
SBS Chr3 15116599 A-T Homo INTERGENIC
SBS Chr3 18825459 C-T Homo INTERGENIC
SBS Chr3 21294403 C-T Homo INTERGENIC
SBS Chr3 23697965 T-A Hetero INTERGENIC
SBS Chr3 37475010 C-T Hetero INTRON
SBS Chr4 31837788 T-A Homo INTERGENIC
SBS Chr5 7835291 C-T Hetero INTERGENIC
SBS Chr5 11244223 C-T Hetero INTERGENIC
SBS Chr5 11597917 G-C Homo INTERGENIC
SBS Chr5 25938373 G-A Hetero INTERGENIC
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr6 28639665 G-A Hetero INTERGENIC
SBS Chr7 11061102 A-G Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr8 8834495 T-A Hetero INTERGENIC
SBS Chr8 15458629 C-T Homo INTERGENIC
SBS Chr10 3238467 G-A Hetero INTERGENIC
SBS Chr10 12435967 A-T Hetero INTERGENIC
SBS Chr10 15683691 A-G Homo INTERGENIC
SBS Chr10 17325294 C-T Hetero INTERGENIC
SBS Chr10 17778363 A-G Homo INTERGENIC
SBS Chr11 8622035 G-A Homo INTERGENIC
SBS Chr11 18076761 C-T Homo INTERGENIC
SBS Chr11 21290508 C-A Homo INTERGENIC
SBS Chr12 25382543 C-T Hetero SYNONYMOUS_CODING

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1120001 1148000 27999 2
Deletion Chr8 1210970 1210971 1
Deletion Chr10 2232757 2232759 2
Deletion Chr6 2361926 2361928 2
Deletion Chr8 2469535 2469620 85
Deletion Chr2 3321378 3321381 3 OsKitaake02g048300
Deletion Chr7 3580574 3580582 8
Deletion Chr2 6890340 6890344 4
Deletion Chr1 6901065 6901066 1
Deletion Chr11 7836818 7836835 17
Deletion Chr11 8096617 8096623 6
Deletion Chr10 10044028 10044031 3
Deletion Chr1 16755203 16755204 1
Deletion Chr1 19181816 19181818 2
Deletion Chr9 22769168 22769170 2
Deletion Chr5 23698567 23698568 1
Deletion Chr12 25477873 25477877 4 OsKitaake12g209300
Deletion Chr8 25755012 25755037 25
Deletion Chr11 25893471 25893475 4
Deletion Chr1 26680992 26680994 2
Deletion Chr5 27479895 27479896 1
Deletion Chr1 29853017 29853026 9
Deletion Chr2 33937538 33937555 17
Deletion Chr1 37466102 37466104 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 19746944 19746946 1
Insertion Chr6 27159774 27159777 2
Insertion Chr12 1136387 1136390 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 856980 866088
Inversion Chr8 2427738 2435836 2
Inversion Chr8 2427743 2435834 2
Inversion Chr9 15579547 15629469 OsKitaake09g110600
Inversion Chr2 18251547 18488480
Inversion Chr2 18251560 18488490

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11855662 Chr8 7663333
Translocation Chr11 11897895 Chr2 28413160
Translocation Chr11 11961672 Chr2 28413261
Translocation Chr11 11961794 Chr3 15931285 OsKitaake03g203866

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	609320	T-A	Hetero	INTERGENIC
SBS	Chr1	5475822	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	16596861	T-C	Homo	INTERGENIC
SBS	Chr1	17902279	T-C	Homo	INTERGENIC
SBS	Chr1	18509122	C-G	Homo	INTERGENIC
SBS	Chr1	18734117	A-G	Homo	INTERGENIC
SBS	Chr2	7440579	G-A	Homo	INTERGENIC
SBS	Chr2	13810341	T-C	Hetero	INTERGENIC
SBS	Chr2	16774279	G-A	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	3431278	C-A	Homo	INTERGENIC
SBS	Chr3	15116599	A-T	Homo	INTERGENIC
SBS	Chr3	18825459	C-T	Homo	INTERGENIC
SBS	Chr3	21294403	C-T	Homo	INTERGENIC
SBS	Chr3	23697965	T-A	Hetero	INTERGENIC
SBS	Chr3	37475010	C-T	Hetero	INTRON
SBS	Chr4	31837788	T-A	Homo	INTERGENIC
SBS	Chr5	7835291	C-T	Hetero	INTERGENIC
SBS	Chr5	11244223	C-T	Hetero	INTERGENIC
SBS	Chr5	11597917	G-C	Homo	INTERGENIC
SBS	Chr5	25938373	G-A	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr6	28639665	G-A	Hetero	INTERGENIC
SBS	Chr7	11061102	A-G	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr8	8834495	T-A	Hetero	INTERGENIC
SBS	Chr8	15458629	C-T	Homo	INTERGENIC
SBS	Chr10	3238467	G-A	Hetero	INTERGENIC
SBS	Chr10	12435967	A-T	Hetero	INTERGENIC
SBS	Chr10	15683691	A-G	Homo	INTERGENIC
SBS	Chr10	17325294	C-T	Hetero	INTERGENIC
SBS	Chr10	17778363	A-G	Homo	INTERGENIC
SBS	Chr11	8622035	G-A	Homo	INTERGENIC
SBS	Chr11	18076761	C-T	Homo	INTERGENIC
SBS	Chr11	21290508	C-A	Homo	INTERGENIC
SBS	Chr12	25382543	C-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1120001	1148000	27999	2
Deletion	Chr8	1210970	1210971	1
Deletion	Chr10	2232757	2232759	2
Deletion	Chr6	2361926	2361928	2
Deletion	Chr8	2469535	2469620	85
Deletion	Chr2	3321378	3321381	3	OsKitaake02g048300
Deletion	Chr7	3580574	3580582	8
Deletion	Chr2	6890340	6890344	4
Deletion	Chr1	6901065	6901066	1
Deletion	Chr11	7836818	7836835	17
Deletion	Chr11	8096617	8096623	6
Deletion	Chr10	10044028	10044031	3
Deletion	Chr1	16755203	16755204	1
Deletion	Chr1	19181816	19181818	2
Deletion	Chr9	22769168	22769170	2
Deletion	Chr5	23698567	23698568	1
Deletion	Chr12	25477873	25477877	4	OsKitaake12g209300
Deletion	Chr8	25755012	25755037	25
Deletion	Chr11	25893471	25893475	4
Deletion	Chr1	26680992	26680994	2
Deletion	Chr5	27479895	27479896	1
Deletion	Chr1	29853017	29853026	9
Deletion	Chr2	33937538	33937555	17
Deletion	Chr1	37466102	37466104	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	856980	866088
Inversion	Chr8	2427738	2435836	2
Inversion	Chr8	2427743	2435834	2
Inversion	Chr9	15579547	15629469	OsKitaake09g110600
Inversion	Chr2	18251547	18488480
Inversion	Chr2	18251560	18488490

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes