Search Kitaake

Mutant Information

Mutant Name	FN1025-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1025-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19193692 C-G Homo INTERGENIC
SBS Chr1 26405381 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g256900
SBS Chr1 39950499 A-T Hetero INTRON
SBS Chr1 42407748 G-A Hetero INTERGENIC
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr3 3406147 C-T Hetero INTERGENIC
SBS Chr3 29699880 A-G Hetero UTR_3_PRIME
SBS Chr4 3294621 C-T Hetero INTERGENIC
SBS Chr4 4340663 A-G Homo INTERGENIC
SBS Chr4 4376483 A-T Homo INTERGENIC
SBS Chr4 11457462 C-T Hetero INTERGENIC
SBS Chr4 12433270 A-T Homo INTERGENIC
SBS Chr4 17961820 G-T Homo INTERGENIC
SBS Chr5 1122232 T-A Homo INTERGENIC
SBS Chr5 13901925 C-A Hetero INTERGENIC
SBS Chr5 16617355 C-T Hetero INTERGENIC
SBS Chr6 1829859 C-T Hetero INTERGENIC
SBS Chr6 2949656 T-G Homo UTR_5_PRIME
SBS Chr6 8586267 A-G Hetero INTERGENIC
SBS Chr6 13388595 T-C Hetero INTERGENIC
SBS Chr6 25678497 T-C Hetero INTERGENIC
SBS Chr7 4405281 C-T Hetero INTRON
SBS Chr7 14106774 C-G Hetero INTRON
SBS Chr7 15220133 G-T Homo INTERGENIC
SBS Chr7 18920959 C-A Hetero INTERGENIC
SBS Chr7 20407218 G-T Hetero INTERGENIC
SBS Chr7 20458375 T-C Hetero INTERGENIC
SBS Chr7 21621859 C-T Hetero INTERGENIC
SBS Chr7 23730682 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 18115099 G-C Hetero INTERGENIC
SBS Chr9 7308986 A-G Hetero INTERGENIC
SBS Chr10 9886288 G-A Hetero INTERGENIC
SBS Chr10 10175830 C-T Hetero INTERGENIC
SBS Chr10 17647012 C-T Hetero INTERGENIC
SBS Chr10 20064253 C-A Hetero INTERGENIC
SBS Chr10 20069264 A-G Hetero INTERGENIC
SBS Chr10 20784850 G-C Homo INTERGENIC
SBS Chr11 22753510 A-T Hetero INTRON
SBS Chr12 16635727 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr11 815001 832000 16999 4
Deletion Chr4 13043738 13043749 11
Deletion Chr1 15688907 15688908 1
Deletion Chr4 17022934 17022937 3
Deletion Chr9 20040413 20040414 1
Deletion Chr10 22571899 22571904 5
Deletion Chr11 22648493 22648504 11 OsKitaake11g179800
Deletion Chr3 26609658 26609660 2
Deletion Chr6 30680263 30680266 3 OsKitaake06g289600
Deletion Chr1 43986140 43986147 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3866420 3866423 2
Insertion Chr3 15986072 15986075 2
Insertion Chr6 18260956 18260959 2
Insertion Chr12 17238951 17238954 2
Insertion Chr6 15742549 15742552 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 23636443 24075736
Inversion Chr3 23636447 24075748
Inversion Chr11 26986382 27088081 OsKitaake11g221000
Inversion Chr11 26986386 27088086 OsKitaake11g221000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 25271889 Chr8 3351436 OsKitaake12g206000
Translocation Chr12 25274021 Chr8 3351435 OsKitaake12g206050

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19193692	C-G	Homo	INTERGENIC
SBS	Chr1	26405381	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g256900
SBS	Chr1	39950499	A-T	Hetero	INTRON
SBS	Chr1	42407748	G-A	Hetero	INTERGENIC
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr3	3406147	C-T	Hetero	INTERGENIC
SBS	Chr3	29699880	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	3294621	C-T	Hetero	INTERGENIC
SBS	Chr4	4340663	A-G	Homo	INTERGENIC
SBS	Chr4	4376483	A-T	Homo	INTERGENIC
SBS	Chr4	11457462	C-T	Hetero	INTERGENIC
SBS	Chr4	12433270	A-T	Homo	INTERGENIC
SBS	Chr4	17961820	G-T	Homo	INTERGENIC
SBS	Chr5	1122232	T-A	Homo	INTERGENIC
SBS	Chr5	13901925	C-A	Hetero	INTERGENIC
SBS	Chr5	16617355	C-T	Hetero	INTERGENIC
SBS	Chr6	1829859	C-T	Hetero	INTERGENIC
SBS	Chr6	2949656	T-G	Homo	UTR_5_PRIME
SBS	Chr6	8586267	A-G	Hetero	INTERGENIC
SBS	Chr6	13388595	T-C	Hetero	INTERGENIC
SBS	Chr6	25678497	T-C	Hetero	INTERGENIC
SBS	Chr7	4405281	C-T	Hetero	INTRON
SBS	Chr7	14106774	C-G	Hetero	INTRON
SBS	Chr7	15220133	G-T	Homo	INTERGENIC
SBS	Chr7	18920959	C-A	Hetero	INTERGENIC
SBS	Chr7	20407218	G-T	Hetero	INTERGENIC
SBS	Chr7	20458375	T-C	Hetero	INTERGENIC
SBS	Chr7	21621859	C-T	Hetero	INTERGENIC
SBS	Chr7	23730682	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	18115099	G-C	Hetero	INTERGENIC
SBS	Chr9	7308986	A-G	Hetero	INTERGENIC
SBS	Chr10	9886288	G-A	Hetero	INTERGENIC
SBS	Chr10	10175830	C-T	Hetero	INTERGENIC
SBS	Chr10	17647012	C-T	Hetero	INTERGENIC
SBS	Chr10	20064253	C-A	Hetero	INTERGENIC
SBS	Chr10	20069264	A-G	Hetero	INTERGENIC
SBS	Chr10	20784850	G-C	Homo	INTERGENIC
SBS	Chr11	22753510	A-T	Hetero	INTRON
SBS	Chr12	16635727	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr11	815001	832000	16999	4
Deletion	Chr4	13043738	13043749	11
Deletion	Chr1	15688907	15688908	1
Deletion	Chr4	17022934	17022937	3
Deletion	Chr9	20040413	20040414	1
Deletion	Chr10	22571899	22571904	5
Deletion	Chr11	22648493	22648504	11	OsKitaake11g179800
Deletion	Chr3	26609658	26609660	2
Deletion	Chr6	30680263	30680266	3	OsKitaake06g289600
Deletion	Chr1	43986140	43986147	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	23636443	24075736
Inversion	Chr3	23636447	24075748
Inversion	Chr11	26986382	27088081	OsKitaake11g221000
Inversion	Chr11	26986386	27088086	OsKitaake11g221000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes