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| Mutant Information |
|---|
| Mutant Name | FN1026-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1026-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32054471 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 39019797 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 11264430 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12267040 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 14417256 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 26826277 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23938257 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35693058 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3501607 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 14589911 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15490265 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15490266 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23508548 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10364278 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21956125 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 25120383 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 28340644 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 6768690 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12301709 | G-A | Homo | INTRON | |
| SBS | Chr7 | 20095603 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 23249167 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 24867972 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27873115 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g260800 |
| SBS | Chr8 | 10652850 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 11410150 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 20936762 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23338439 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 10737044 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 10873369 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13484492 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 573520 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4332027 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17371895 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20776344 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 16967474 | A-T | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3083834 | 3083846 | 12 | OsKitaake12g044900 |
| Deletion | Chr5 | 6608199 | 6608202 | 3 | |
| Deletion | Chr2 | 7469168 | 7469169 | 1 | |
| Deletion | Chr2 | 7907584 | 7907586 | 2 | |
| Deletion | Chr6 | 8911786 | 8911787 | 1 | |
| Deletion | Chr5 | 13525464 | 13525466 | 2 | |
| Deletion | Chr12 | 14551002 | 14551003 | 1 | |
| Deletion | Chr8 | 14826001 | 14984000 | 157999 | 12 |
| Deletion | Chr11 | 16068818 | 16068838 | 20 | |
| Deletion | Chr9 | 19131289 | 19131290 | 1 | OsKitaake09g153600 |
| Deletion | Chr6 | 20700026 | 20700030 | 4 | |
| Deletion | Chr8 | 22286028 | 22286032 | 4 | |
| Deletion | Chr2 | 26826246 | 26826251 | 5 | |
| Deletion | Chr11 | 27004305 | 27004309 | 4 | |
| Deletion | Chr5 | 28249066 | 28249068 | 2 | |
| Deletion | Chr1 | 43985611 | 43985613 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 17308480 | 17308485 | 4 | |
| Insertion | Chr3 | 30636054 | 30636057 | 2 | |
| Insertion | Chr7 | 11984659 | 11984661 | 1 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 538826 | 595850 | OsKitaake10g004000 |
| Inversion | Chr10 | 538838 | 595850 | OsKitaake10g004000 |
| Inversion | Chr6 | 5030513 | 5897710 | |
| Inversion | Chr8 | 11087052 | 11187145 | |
| Inversion | Chr8 | 11087055 | 11187160 | |
| Inversion | Chr5 | 14373967 | 14376233 | |
| Inversion | Chr5 | 14373976 | 14376249 |
Translocations: 12
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 2617235 | Chr2 | 8218952 | OsKitaake02g105000 |
| Translocation | Chr6 | 4755718 | Chr1 | 6102927 | |
| Translocation | Chr11 | 5426133 | Chr4 | 15433158 | |
| Translocation | Chr11 | 5426139 | Chr5 | 2835688 | OsKitaake05g032600 |
| Translocation | Chr6 | 5897710 | Chr1 | 6102684 | |
| Translocation | Chr9 | 13773660 | Chr8 | 14972132 | |
| Translocation | Chr9 | 13773667 | Chr8 | 14826025 | |
| Translocation | Chr9 | 13777078 | Chr8 | 14984479 | 2 |
| Translocation | Chr9 | 13779971 | Chr8 | 14971691 | |
| Translocation | Chr10 | 23064285 | Chr6 | 4755718 | |
| Translocation | Chr10 | 23064286 | Chr1 | 6102684 | |
| Translocation | Chr10 | 23064555 | Chr6 | 5897709 |