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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1027-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1027-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6356408 C-A Homo UTR_3_PRIME
SBS Chr1 6356409 T-A Homo UTR_3_PRIME
SBS Chr1 29859411 C-T Hetero INTERGENIC
SBS Chr2 156017 G-C Homo INTERGENIC
SBS Chr2 156022 G-C Homo INTERGENIC
SBS Chr2 3675588 G-A Hetero INTERGENIC
SBS Chr2 8706744 G-C Hetero INTERGENIC
SBS Chr2 16867488 A-C Hetero INTERGENIC
SBS Chr2 36373524 A-G Hetero INTERGENIC
SBS Chr3 9029455 C-T Homo UTR_3_PRIME
SBS Chr3 21031846 C-A Hetero INTERGENIC
SBS Chr3 24219961 G-C Hetero INTERGENIC
SBS Chr3 36279523 T-C Homo INTRON
SBS Chr4 7071092 G-A Homo INTERGENIC
SBS Chr4 8418052 T-A Hetero INTERGENIC
SBS Chr4 14219275 T-A Homo INTERGENIC
SBS Chr4 19749055 G-A Homo INTERGENIC
SBS Chr4 28369802 T-A Homo INTERGENIC
SBS Chr5 6671816 T-C Hetero INTERGENIC
SBS Chr5 10540517 G-A Hetero INTERGENIC
SBS Chr5 10540518 C-T Hetero INTERGENIC
SBS Chr5 17261854 A-T Hetero INTERGENIC
SBS Chr5 17921252 A-G Homo INTERGENIC
SBS Chr5 27479101 C-T Hetero INTERGENIC
SBS Chr6 11402377 C-G Hetero INTERGENIC
SBS Chr7 8640198 C-A Hetero INTERGENIC
SBS Chr7 15886462 C-T Hetero INTERGENIC
SBS Chr7 24977454 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g223500
SBS Chr7 28304307 G-A Hetero INTERGENIC
SBS Chr8 17227470 T-A Hetero INTERGENIC
SBS Chr8 17227471 C-A Hetero INTERGENIC
SBS Chr8 18285526 G-A Hetero INTERGENIC
SBS Chr9 13518126 G-A Hetero INTERGENIC
SBS Chr9 15652119 C-G Hetero INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr10 14033226 C-A Homo INTRON
SBS Chr11 5978648 G-T Homo INTRON
SBS Chr11 5978649 C-T Homo INTRON
SBS Chr11 19031464 G-A Hetero INTERGENIC
SBS Chr11 20028320 G-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 23001 122000 98999 12
Deletion Chr3 564211 564217 6
Deletion Chr11 1105001 1300000 194999 26
Deletion Chr7 1559001 1706000 146999 29
Deletion Chr3 4718624 4718633 9
Deletion Chr1 4788481 4788497 16
Deletion Chr4 6245001 6281000 35999 2
Deletion Chr2 7578636 7578637 1
Deletion Chr2 16948152 16948162 10
Deletion Chr3 17538124 17538125 1
Deletion Chr8 21334939 21334943 4
Deletion Chr8 22773388 22773389 1
Deletion Chr5 25681527 25681528 1
Deletion Chr4 29158514 29158519 5 OsKitaake04g221300
Deletion Chr11 29297895 29297900 5
Deletion Chr1 34626483 34626486 3
Deletion Chr2 36627035 36627041 6 OsKitaake02g389900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 6789229 6789232 2
Insertion Chr2 13854529 13854531 1
Insertion Chr3 8671974 8671978 3

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 23863 Chr6 23184203 OsKitaake11g000064
Translocation Chr11 1104942 Chr3 3786213 OsKitaake03g053200
Translocation Chr11 1105578 Chr3 3786206 OsKitaake03g053200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6356408	C-A	Homo	UTR_3_PRIME
SBS	Chr1	6356409	T-A	Homo	UTR_3_PRIME
SBS	Chr1	29859411	C-T	Hetero	INTERGENIC
SBS	Chr2	156017	G-C	Homo	INTERGENIC
SBS	Chr2	156022	G-C	Homo	INTERGENIC
SBS	Chr2	3675588	G-A	Hetero	INTERGENIC
SBS	Chr2	8706744	G-C	Hetero	INTERGENIC
SBS	Chr2	16867488	A-C	Hetero	INTERGENIC
SBS	Chr2	36373524	A-G	Hetero	INTERGENIC
SBS	Chr3	9029455	C-T	Homo	UTR_3_PRIME
SBS	Chr3	21031846	C-A	Hetero	INTERGENIC
SBS	Chr3	24219961	G-C	Hetero	INTERGENIC
SBS	Chr3	36279523	T-C	Homo	INTRON
SBS	Chr4	7071092	G-A	Homo	INTERGENIC
SBS	Chr4	8418052	T-A	Hetero	INTERGENIC
SBS	Chr4	14219275	T-A	Homo	INTERGENIC
SBS	Chr4	19749055	G-A	Homo	INTERGENIC
SBS	Chr4	28369802	T-A	Homo	INTERGENIC
SBS	Chr5	6671816	T-C	Hetero	INTERGENIC
SBS	Chr5	10540517	G-A	Hetero	INTERGENIC
SBS	Chr5	10540518	C-T	Hetero	INTERGENIC
SBS	Chr5	17261854	A-T	Hetero	INTERGENIC
SBS	Chr5	17921252	A-G	Homo	INTERGENIC
SBS	Chr5	27479101	C-T	Hetero	INTERGENIC
SBS	Chr6	11402377	C-G	Hetero	INTERGENIC
SBS	Chr7	8640198	C-A	Hetero	INTERGENIC
SBS	Chr7	15886462	C-T	Hetero	INTERGENIC
SBS	Chr7	24977454	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g223500
SBS	Chr7	28304307	G-A	Hetero	INTERGENIC
SBS	Chr8	17227470	T-A	Hetero	INTERGENIC
SBS	Chr8	17227471	C-A	Hetero	INTERGENIC
SBS	Chr8	18285526	G-A	Hetero	INTERGENIC
SBS	Chr9	13518126	G-A	Hetero	INTERGENIC
SBS	Chr9	15652119	C-G	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Homo	INTRON
SBS	Chr11	5978648	G-T	Homo	INTRON
SBS	Chr11	5978649	C-T	Homo	INTRON
SBS	Chr11	19031464	G-A	Hetero	INTERGENIC
SBS	Chr11	20028320	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	23001	122000	98999	12
Deletion	Chr3	564211	564217	6
Deletion	Chr11	1105001	1300000	194999	26
Deletion	Chr7	1559001	1706000	146999	29
Deletion	Chr3	4718624	4718633	9
Deletion	Chr1	4788481	4788497	16
Deletion	Chr4	6245001	6281000	35999	2
Deletion	Chr2	7578636	7578637	1
Deletion	Chr2	16948152	16948162	10
Deletion	Chr3	17538124	17538125	1
Deletion	Chr8	21334939	21334943	4
Deletion	Chr8	22773388	22773389	1
Deletion	Chr5	25681527	25681528	1
Deletion	Chr4	29158514	29158519	5	OsKitaake04g221300
Deletion	Chr11	29297895	29297900	5
Deletion	Chr1	34626483	34626486	3
Deletion	Chr2	36627035	36627041	6	OsKitaake02g389900

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	23863	Chr6	23184203	OsKitaake11g000064
Translocation	Chr11	1104942	Chr3	3786213	OsKitaake03g053200
Translocation	Chr11	1105578	Chr3	3786206	OsKitaake03g053200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes