Search Kitaake

Mutant Information

Mutant Name	FN1028-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1028-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3516431 A-G Homo INTRON
SBS Chr1 15875052 C-T Hetero INTERGENIC
SBS Chr2 19938973 C-T Hetero INTERGENIC
SBS Chr2 20676107 T-A Homo INTERGENIC
SBS Chr2 26721170 G-A Hetero INTERGENIC
SBS Chr3 4764110 T-A Hetero INTERGENIC
SBS Chr3 13484718 G-A Hetero INTERGENIC
SBS Chr3 13484724 T-A Hetero INTERGENIC
SBS Chr3 24833514 G-C Hetero INTERGENIC
SBS Chr3 27230162 T-C Hetero INTERGENIC
SBS Chr3 27256990 T-A Hetero INTERGENIC
SBS Chr4 16667909 G-A Hetero INTERGENIC
SBS Chr4 33711710 C-T Hetero INTRON
SBS Chr4 36890043 C-T Hetero INTERGENIC
SBS Chr4 36890048 C-G Hetero INTERGENIC
SBS Chr5 24245056 C-T Homo INTRON
SBS Chr6 9944139 C-T Homo INTERGENIC
SBS Chr6 11311230 C-G Homo INTERGENIC
SBS Chr6 13540959 A-C Hetero INTERGENIC
SBS Chr6 21070451 A-G Hetero INTERGENIC
SBS Chr6 25200031 T-C Hetero INTERGENIC
SBS Chr7 7344450 T-C Hetero INTERGENIC
SBS Chr7 8724200 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g092700
SBS Chr7 11420929 C-T Hetero INTERGENIC
SBS Chr7 12296978 T-G Hetero INTERGENIC
SBS Chr7 14879010 G-A Hetero INTERGENIC
SBS Chr7 18026239 A-C Hetero INTERGENIC
SBS Chr7 18472108 T-C Hetero INTRON
SBS Chr7 20109094 A-G Homo UTR_3_PRIME
SBS Chr7 22752366 G-T Hetero INTRON
SBS Chr8 18532167 G-A Homo INTERGENIC
SBS Chr8 23206846 G-T Hetero INTERGENIC
SBS Chr9 14588320 T-A Homo INTERGENIC
SBS Chr9 14692410 C-A Homo INTERGENIC
SBS Chr9 19285732 A-G Hetero INTRON
SBS Chr10 1688881 G-A Hetero INTERGENIC
SBS Chr10 1789186 G-A Hetero INTERGENIC
SBS Chr10 5349769 A-C Homo INTERGENIC
SBS Chr10 18778693 C-T Hetero INTRON
SBS Chr10 18778698 C-T Hetero INTRON
SBS Chr10 22538277 C-T Hetero INTERGENIC
SBS Chr10 23462771 G-A Hetero INTERGENIC
SBS Chr11 5295641 C-A Homo INTRON
SBS Chr12 4560677 A-G Hetero INTERGENIC
SBS Chr12 15934274 T-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 649358 649362 4
Deletion Chr4 2223726 2223727 1
Deletion Chr2 2669499 2669501 2
Deletion Chr4 3179061 3179063 2
Deletion Chr10 5532103 5532105 2
Deletion Chr10 6436715 6436720 5
Deletion Chr4 8445099 8445100 1
Deletion Chr1 8659757 8659761 4
Deletion Chr10 10773714 10773718 4
Deletion Chr6 12102462 12102473 11
Deletion Chr9 14869469 14869471 2
Deletion Chr12 15184513 15184516 3
Deletion Chr1 16475916 16475919 3
Deletion Chr7 19969810 19969813 3
Deletion Chr2 22263533 22263541 8
Deletion Chr4 24138651 24138652 1
Deletion Chr5 24296769 24296770 1 OsKitaake05g217000
Deletion Chr1 24810632 24810633 1
Deletion Chr8 26799624 26799629 5
Deletion Chr4 27110955 27110956 1 OsKitaake04g197100
Deletion Chr1 37684012 37684019 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 36930681 36930684 2
Insertion Chr12 26022807 26022810 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 13004707 Chr3 14400414 OsKitaake03g187700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3516431	A-G	Homo	INTRON
SBS	Chr1	15875052	C-T	Hetero	INTERGENIC
SBS	Chr2	19938973	C-T	Hetero	INTERGENIC
SBS	Chr2	20676107	T-A	Homo	INTERGENIC
SBS	Chr2	26721170	G-A	Hetero	INTERGENIC
SBS	Chr3	4764110	T-A	Hetero	INTERGENIC
SBS	Chr3	13484718	G-A	Hetero	INTERGENIC
SBS	Chr3	13484724	T-A	Hetero	INTERGENIC
SBS	Chr3	24833514	G-C	Hetero	INTERGENIC
SBS	Chr3	27230162	T-C	Hetero	INTERGENIC
SBS	Chr3	27256990	T-A	Hetero	INTERGENIC
SBS	Chr4	16667909	G-A	Hetero	INTERGENIC
SBS	Chr4	33711710	C-T	Hetero	INTRON
SBS	Chr4	36890043	C-T	Hetero	INTERGENIC
SBS	Chr4	36890048	C-G	Hetero	INTERGENIC
SBS	Chr5	24245056	C-T	Homo	INTRON
SBS	Chr6	9944139	C-T	Homo	INTERGENIC
SBS	Chr6	11311230	C-G	Homo	INTERGENIC
SBS	Chr6	13540959	A-C	Hetero	INTERGENIC
SBS	Chr6	21070451	A-G	Hetero	INTERGENIC
SBS	Chr6	25200031	T-C	Hetero	INTERGENIC
SBS	Chr7	7344450	T-C	Hetero	INTERGENIC
SBS	Chr7	8724200	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g092700
SBS	Chr7	11420929	C-T	Hetero	INTERGENIC
SBS	Chr7	12296978	T-G	Hetero	INTERGENIC
SBS	Chr7	14879010	G-A	Hetero	INTERGENIC
SBS	Chr7	18026239	A-C	Hetero	INTERGENIC
SBS	Chr7	18472108	T-C	Hetero	INTRON
SBS	Chr7	20109094	A-G	Homo	UTR_3_PRIME
SBS	Chr7	22752366	G-T	Hetero	INTRON
SBS	Chr8	18532167	G-A	Homo	INTERGENIC
SBS	Chr8	23206846	G-T	Hetero	INTERGENIC
SBS	Chr9	14588320	T-A	Homo	INTERGENIC
SBS	Chr9	14692410	C-A	Homo	INTERGENIC
SBS	Chr9	19285732	A-G	Hetero	INTRON
SBS	Chr10	1688881	G-A	Hetero	INTERGENIC
SBS	Chr10	1789186	G-A	Hetero	INTERGENIC
SBS	Chr10	5349769	A-C	Homo	INTERGENIC
SBS	Chr10	18778693	C-T	Hetero	INTRON
SBS	Chr10	18778698	C-T	Hetero	INTRON
SBS	Chr10	22538277	C-T	Hetero	INTERGENIC
SBS	Chr10	23462771	G-A	Hetero	INTERGENIC
SBS	Chr11	5295641	C-A	Homo	INTRON
SBS	Chr12	4560677	A-G	Hetero	INTERGENIC
SBS	Chr12	15934274	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	649358	649362	4
Deletion	Chr4	2223726	2223727	1
Deletion	Chr2	2669499	2669501	2
Deletion	Chr4	3179061	3179063	2
Deletion	Chr10	5532103	5532105	2
Deletion	Chr10	6436715	6436720	5
Deletion	Chr4	8445099	8445100	1
Deletion	Chr1	8659757	8659761	4
Deletion	Chr10	10773714	10773718	4
Deletion	Chr6	12102462	12102473	11
Deletion	Chr9	14869469	14869471	2
Deletion	Chr12	15184513	15184516	3
Deletion	Chr1	16475916	16475919	3
Deletion	Chr7	19969810	19969813	3
Deletion	Chr2	22263533	22263541	8
Deletion	Chr4	24138651	24138652	1
Deletion	Chr5	24296769	24296770	1	OsKitaake05g217000
Deletion	Chr1	24810632	24810633	1
Deletion	Chr8	26799624	26799629	5
Deletion	Chr4	27110955	27110956	1	OsKitaake04g197100
Deletion	Chr1	37684012	37684019	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	13004707	Chr3	14400414	OsKitaake03g187700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes