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Mutant Information

Mutant Name	FN1029-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1029-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2061050 T-A Hetero INTERGENIC
SBS Chr1 10063648 G-T Hetero INTERGENIC
SBS Chr1 10084528 C-A Hetero INTERGENIC
SBS Chr1 13631860 C-G Hetero INTERGENIC
SBS Chr1 26198643 C-T Homo INTERGENIC
SBS Chr2 8944869 T-C Hetero INTERGENIC
SBS Chr2 24927224 C-T Homo INTERGENIC
SBS Chr2 32820059 A-G Hetero INTERGENIC
SBS Chr3 1583607 C-T Hetero UTR_5_PRIME
SBS Chr3 6269459 A-T Hetero INTERGENIC
SBS Chr3 9285124 C-T Hetero INTERGENIC
SBS Chr4 1845014 C-G Homo INTRON
SBS Chr4 8150856 A-G Hetero INTRON
SBS Chr4 17766462 G-A Hetero INTERGENIC
SBS Chr4 21507439 C-T Hetero INTERGENIC
SBS Chr4 29568461 T-A Homo UTR_3_PRIME
SBS Chr4 29568462 A-G Homo UTR_3_PRIME
SBS Chr4 30731710 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g237100
SBS Chr4 31121148 A-T Hetero INTERGENIC
SBS Chr4 34579392 A-G Homo INTERGENIC
SBS Chr5 450693 G-A Hetero INTERGENIC
SBS Chr5 5457547 A-G Hetero INTERGENIC
SBS Chr5 8386861 G-T Hetero INTRON
SBS Chr5 9727629 G-A Hetero INTERGENIC
SBS Chr5 29826739 T-A Homo INTERGENIC
SBS Chr6 14235395 G-A Hetero INTERGENIC
SBS Chr6 14988343 C-A Hetero INTERGENIC
SBS Chr7 6933173 T-A Homo INTERGENIC
SBS Chr7 9161477 G-C Homo INTERGENIC
SBS Chr7 19447218 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g157700
SBS Chr8 6251052 C-T Hetero INTERGENIC
SBS Chr8 16664744 A-G Homo INTERGENIC
SBS Chr8 19055154 G-C Hetero INTERGENIC
SBS Chr9 1596057 C-A Hetero INTERGENIC
SBS Chr9 12543996 G-A Hetero INTERGENIC
SBS Chr10 1487752 G-T Hetero INTERGENIC
SBS Chr11 2410622 G-A Hetero UTR_3_PRIME
SBS Chr11 25733420 G-A Hetero INTERGENIC
SBS Chr11 25758769 T-C Hetero INTERGENIC
SBS Chr11 28178901 G-C Hetero INTERGENIC
SBS Chr12 2875790 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 6686003 6686105 102
Deletion Chr7 6933353 6933354 1
Deletion Chr10 8522308 8522316 8
Deletion Chr10 8706655 8706656 1
Deletion Chr1 11569861 11570023 162
Deletion Chr11 12526345 12526499 154
Deletion Chr2 14898291 14898292 1
Deletion Chr8 16421294 16421295 1
Deletion Chr1 17283622 17284286 664
Deletion Chr9 18430330 18430346 16
Deletion Chr6 20896818 20896820 2
Deletion Chr11 21250550 21250551 1
Deletion Chr1 23944171 23944172 1
Deletion Chr5 26046421 26046423 2
Deletion Chr8 27327084 27327087 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4605218 4605221 2
Insertion Chr11 15642782 15642785 2
Insertion Chr8 9073214 9073218 3
Insertion Chr9 9276640 9276643 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 3985225 3985526 OsKitaake06g055700
Inversion Chr3 5798564 5798806 OsKitaake03g082400
Inversion Chr8 15862511 15862746 OsKitaake08g122300
Inversion Chr9 20953498 20953665 OsKitaake09g179300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2061050	T-A	Hetero	INTERGENIC
SBS	Chr1	10063648	G-T	Hetero	INTERGENIC
SBS	Chr1	10084528	C-A	Hetero	INTERGENIC
SBS	Chr1	13631860	C-G	Hetero	INTERGENIC
SBS	Chr1	26198643	C-T	Homo	INTERGENIC
SBS	Chr2	8944869	T-C	Hetero	INTERGENIC
SBS	Chr2	24927224	C-T	Homo	INTERGENIC
SBS	Chr2	32820059	A-G	Hetero	INTERGENIC
SBS	Chr3	1583607	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	6269459	A-T	Hetero	INTERGENIC
SBS	Chr3	9285124	C-T	Hetero	INTERGENIC
SBS	Chr4	1845014	C-G	Homo	INTRON
SBS	Chr4	8150856	A-G	Hetero	INTRON
SBS	Chr4	17766462	G-A	Hetero	INTERGENIC
SBS	Chr4	21507439	C-T	Hetero	INTERGENIC
SBS	Chr4	29568461	T-A	Homo	UTR_3_PRIME
SBS	Chr4	29568462	A-G	Homo	UTR_3_PRIME
SBS	Chr4	30731710	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g237100
SBS	Chr4	31121148	A-T	Hetero	INTERGENIC
SBS	Chr4	34579392	A-G	Homo	INTERGENIC
SBS	Chr5	450693	G-A	Hetero	INTERGENIC
SBS	Chr5	5457547	A-G	Hetero	INTERGENIC
SBS	Chr5	8386861	G-T	Hetero	INTRON
SBS	Chr5	9727629	G-A	Hetero	INTERGENIC
SBS	Chr5	29826739	T-A	Homo	INTERGENIC
SBS	Chr6	14235395	G-A	Hetero	INTERGENIC
SBS	Chr6	14988343	C-A	Hetero	INTERGENIC
SBS	Chr7	6933173	T-A	Homo	INTERGENIC
SBS	Chr7	9161477	G-C	Homo	INTERGENIC
SBS	Chr7	19447218	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g157700
SBS	Chr8	6251052	C-T	Hetero	INTERGENIC
SBS	Chr8	16664744	A-G	Homo	INTERGENIC
SBS	Chr8	19055154	G-C	Hetero	INTERGENIC
SBS	Chr9	1596057	C-A	Hetero	INTERGENIC
SBS	Chr9	12543996	G-A	Hetero	INTERGENIC
SBS	Chr10	1487752	G-T	Hetero	INTERGENIC
SBS	Chr11	2410622	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	25733420	G-A	Hetero	INTERGENIC
SBS	Chr11	25758769	T-C	Hetero	INTERGENIC
SBS	Chr11	28178901	G-C	Hetero	INTERGENIC
SBS	Chr12	2875790	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	6686003	6686105	102
Deletion	Chr7	6933353	6933354	1
Deletion	Chr10	8522308	8522316	8
Deletion	Chr10	8706655	8706656	1
Deletion	Chr1	11569861	11570023	162
Deletion	Chr11	12526345	12526499	154
Deletion	Chr2	14898291	14898292	1
Deletion	Chr8	16421294	16421295	1
Deletion	Chr1	17283622	17284286	664
Deletion	Chr9	18430330	18430346	16
Deletion	Chr6	20896818	20896820	2
Deletion	Chr11	21250550	21250551	1
Deletion	Chr1	23944171	23944172	1
Deletion	Chr5	26046421	26046423	2
Deletion	Chr8	27327084	27327087	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3985225	3985526	OsKitaake06g055700
Inversion	Chr3	5798564	5798806	OsKitaake03g082400
Inversion	Chr8	15862511	15862746	OsKitaake08g122300
Inversion	Chr9	20953498	20953665	OsKitaake09g179300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes