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Mutant Information

Mutant Name	FN1030-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1030-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4946766 T-A Hetero INTRON
SBS Chr1 16984820 G-A Hetero INTERGENIC
SBS Chr1 38238964 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 38246712 C-T Hetero INTERGENIC
SBS Chr1 41350217 C-A Hetero INTERGENIC
SBS Chr2 27502071 C-T Hetero INTERGENIC
SBS Chr3 12106047 G-T Hetero INTERGENIC
SBS Chr3 14714886 A-G Hetero INTERGENIC
SBS Chr4 766736 T-C Hetero INTERGENIC
SBS Chr4 20225871 A-C Hetero INTERGENIC
SBS Chr4 22055588 C-T Hetero INTERGENIC
SBS Chr4 24179310 C-T Hetero INTERGENIC
SBS Chr4 24630422 C-G Hetero INTERGENIC
SBS Chr5 9020466 C-T Homo INTERGENIC
SBS Chr5 20475298 C-T Hetero INTERGENIC
SBS Chr6 11243143 C-T Hetero INTRON
SBS Chr6 13623459 T-A Hetero INTERGENIC
SBS Chr6 15813157 G-A Hetero INTERGENIC
SBS Chr7 507945 A-G Hetero UTR_3_PRIME
SBS Chr7 979922 T-A Hetero INTERGENIC
SBS Chr7 23173114 C-T Hetero INTRON
SBS Chr8 5209057 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 8273452 C-T Hetero INTERGENIC
SBS Chr9 2159081 G-A Hetero INTERGENIC
SBS Chr9 5576695 G-C Hetero INTERGENIC
SBS Chr9 11411066 G-T Hetero INTERGENIC
SBS Chr9 11411069 G-A Hetero INTERGENIC
SBS Chr10 16562845 C-T Hetero INTERGENIC
SBS Chr11 11144248 A-T Hetero INTERGENIC
SBS Chr11 15907521 A-C Hetero INTRON
SBS Chr12 14803618 G-C Hetero INTERGENIC
SBS Chr12 18283268 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 9744805 9744808 3
Deletion Chr2 11824806 11824807 1
Deletion Chr9 16510743 16510744 1
Deletion Chr2 17903169 17903172 3
Deletion Chr12 18258529 18258539 10
Deletion Chr7 22815531 22815548 17
Deletion Chr5 25270113 25270120 7
Deletion Chr1 26604606 26604610 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32299490 32299493 2
Insertion Chr9 19558686 19558689 2
Insertion Chr10 1175187 1175191 3
Insertion Chr10 13802798 13802800 1
Insertion Chr12 12107613 12107616 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 6137348 6142576
Inversion Chr1 6137360 6142581
Inversion Chr9 17757132 17835034
Inversion Chr9 17757155 17835035
Inversion Chr1 32211378 32307529 2
Inversion Chr1 32211380 32291582 OsKitaake01g325500
Inversion Chr1 35766427 35901941 OsKitaake01g378800
Inversion Chr1 35901950 36435650

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 173549 Chr3 22437318
Translocation Chr8 177712 Chr3 22437309 OsKitaake08g002400
Translocation Chr8 5427696 Chr5 16448689 OsKitaake08g059000
Translocation Chr8 8099315 Chr6 30408863
Translocation Chr8 8099367 Chr5 16448609
Translocation Chr8 8405539 Chr3 10399010
Translocation Chr9 16853190 Chr1 36435639 OsKitaake01g386800
Translocation Chr9 16853205 Chr1 36434423 OsKitaake01g386800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4946766	T-A	Hetero	INTRON
SBS	Chr1	16984820	G-A	Hetero	INTERGENIC
SBS	Chr1	38238964	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	38246712	C-T	Hetero	INTERGENIC
SBS	Chr1	41350217	C-A	Hetero	INTERGENIC
SBS	Chr2	27502071	C-T	Hetero	INTERGENIC
SBS	Chr3	12106047	G-T	Hetero	INTERGENIC
SBS	Chr3	14714886	A-G	Hetero	INTERGENIC
SBS	Chr4	766736	T-C	Hetero	INTERGENIC
SBS	Chr4	20225871	A-C	Hetero	INTERGENIC
SBS	Chr4	22055588	C-T	Hetero	INTERGENIC
SBS	Chr4	24179310	C-T	Hetero	INTERGENIC
SBS	Chr4	24630422	C-G	Hetero	INTERGENIC
SBS	Chr5	9020466	C-T	Homo	INTERGENIC
SBS	Chr5	20475298	C-T	Hetero	INTERGENIC
SBS	Chr6	11243143	C-T	Hetero	INTRON
SBS	Chr6	13623459	T-A	Hetero	INTERGENIC
SBS	Chr6	15813157	G-A	Hetero	INTERGENIC
SBS	Chr7	507945	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	979922	T-A	Hetero	INTERGENIC
SBS	Chr7	23173114	C-T	Hetero	INTRON
SBS	Chr8	5209057	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	8273452	C-T	Hetero	INTERGENIC
SBS	Chr9	2159081	G-A	Hetero	INTERGENIC
SBS	Chr9	5576695	G-C	Hetero	INTERGENIC
SBS	Chr9	11411066	G-T	Hetero	INTERGENIC
SBS	Chr9	11411069	G-A	Hetero	INTERGENIC
SBS	Chr10	16562845	C-T	Hetero	INTERGENIC
SBS	Chr11	11144248	A-T	Hetero	INTERGENIC
SBS	Chr11	15907521	A-C	Hetero	INTRON
SBS	Chr12	14803618	G-C	Hetero	INTERGENIC
SBS	Chr12	18283268	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	9744805	9744808	3
Deletion	Chr2	11824806	11824807	1
Deletion	Chr9	16510743	16510744	1
Deletion	Chr2	17903169	17903172	3
Deletion	Chr12	18258529	18258539	10
Deletion	Chr7	22815531	22815548	17
Deletion	Chr5	25270113	25270120	7
Deletion	Chr1	26604606	26604610	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6137348	6142576
Inversion	Chr1	6137360	6142581
Inversion	Chr9	17757132	17835034
Inversion	Chr9	17757155	17835035
Inversion	Chr1	32211378	32307529	2
Inversion	Chr1	32211380	32291582	OsKitaake01g325500
Inversion	Chr1	35766427	35901941	OsKitaake01g378800
Inversion	Chr1	35901950	36435650

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes