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Mutant Information

Mutant Name	FN1031-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1031-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10695255 T-A Hetero INTERGENIC
SBS Chr1 10739123 C-T Hetero INTERGENIC
SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 23822910 C-T Homo INTERGENIC
SBS Chr1 35796728 G-C Homo INTERGENIC
SBS Chr2 6674102 T-C Hetero INTERGENIC
SBS Chr3 698728 C-T Hetero INTERGENIC
SBS Chr3 7909148 C-A Hetero INTERGENIC
SBS Chr3 9967086 C-T Hetero INTERGENIC
SBS Chr3 15634415 T-A Homo INTERGENIC
SBS Chr3 23479116 C-T Homo INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 30908529 T-C Hetero INTERGENIC
SBS Chr3 34195643 G-C Hetero INTERGENIC
SBS Chr4 22420808 A-G Hetero INTERGENIC
SBS Chr4 28358163 A-G Hetero INTERGENIC
SBS Chr4 34183937 C-A Homo INTERGENIC
SBS Chr4 36954204 T-A Hetero INTRON
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 10169552 T-G Hetero INTERGENIC
SBS Chr5 27138361 T-C Hetero INTERGENIC
SBS Chr6 1463555 T-A Hetero INTERGENIC
SBS Chr6 10589985 C-G Hetero INTRON
SBS Chr6 22116605 G-A Hetero INTERGENIC
SBS Chr7 18616186 G-A Hetero INTERGENIC
SBS Chr8 39639 A-T Homo INTRON
SBS Chr8 1038474 G-A Homo INTERGENIC
SBS Chr8 19926802 G-A Hetero INTERGENIC
SBS Chr8 27936613 T-C Hetero INTERGENIC
SBS Chr9 4017730 C-G Homo INTERGENIC
SBS Chr9 6146992 T-C Hetero INTERGENIC
SBS Chr9 13782059 T-C Hetero INTERGENIC
SBS Chr10 3241142 C-T Hetero INTERGENIC
SBS Chr10 4351568 C-T Hetero INTERGENIC
SBS Chr10 7102617 T-A Hetero INTERGENIC
SBS Chr10 9540104 G-A Hetero INTERGENIC
SBS Chr10 11383467 T-A Hetero INTERGENIC
SBS Chr11 1118013 G-A Hetero INTERGENIC
SBS Chr11 5195486 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 10883646 C-T Hetero INTRON
SBS Chr11 12974745 C-A Hetero INTERGENIC
SBS Chr11 13659771 A-G Hetero INTERGENIC
SBS Chr11 18281142 C-T Hetero INTERGENIC
SBS Chr12 1297669 T-C Hetero SPLICE_SITE_REGION
SBS Chr12 8919505 A-G Homo INTERGENIC
SBS Chr12 11284082 G-A Hetero INTERGENIC
SBS Chr12 16675877 T-C Hetero INTERGENIC
SBS Chr12 21478895 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 700662 700663 1
Deletion Chr2 742256 742257 1
Deletion Chr6 1157881 1157885 4
Deletion Chr6 11052126 11052135 9
Deletion Chr12 13511445 13511447 2
Deletion Chr3 15241495 15241510 15
Deletion Chr3 16214000 16214085 85
Deletion Chr4 16736790 16736794 4
Deletion Chr7 18454620 18454622 2
Deletion Chr3 18714764 18714783 19
Deletion Chr11 26719998 26720003 5
Deletion Chr8 28506548 28506550 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 26912875 26912878 2
Insertion Chr6 16138059 16138062 2
Insertion Chr7 16914611 16914614 2
Insertion Chr7 18906329 18906332 2
Insertion Chr9 12117705 12117708 2
Insertion Chr2 29292738 29292741 2 OsKitaake02g294500

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 18780555 18783262 OsKitaake07g152900
Inversion Chr7 18780571 18783272 OsKitaake07g152900
Inversion Chr2 30885841 31242316 OsKitaake02g320000
Inversion Chr2 30885846 31222324

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 21805760 Chr2 1294564 OsKitaake12g171300
Translocation Chr12 21806395 Chr2 1294558 OsKitaake12g171300
Translocation Chr6 29440436 Chr2 31254038 2
Translocation Chr6 29441175 Chr2 31222316 OsKitaake06g272700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10695255	T-A	Hetero	INTERGENIC
SBS	Chr1	10739123	C-T	Hetero	INTERGENIC
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	23822910	C-T	Homo	INTERGENIC
SBS	Chr1	35796728	G-C	Homo	INTERGENIC
SBS	Chr2	6674102	T-C	Hetero	INTERGENIC
SBS	Chr3	698728	C-T	Hetero	INTERGENIC
SBS	Chr3	7909148	C-A	Hetero	INTERGENIC
SBS	Chr3	9967086	C-T	Hetero	INTERGENIC
SBS	Chr3	15634415	T-A	Homo	INTERGENIC
SBS	Chr3	23479116	C-T	Homo	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	30908529	T-C	Hetero	INTERGENIC
SBS	Chr3	34195643	G-C	Hetero	INTERGENIC
SBS	Chr4	22420808	A-G	Hetero	INTERGENIC
SBS	Chr4	28358163	A-G	Hetero	INTERGENIC
SBS	Chr4	34183937	C-A	Homo	INTERGENIC
SBS	Chr4	36954204	T-A	Hetero	INTRON
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	10169552	T-G	Hetero	INTERGENIC
SBS	Chr5	27138361	T-C	Hetero	INTERGENIC
SBS	Chr6	1463555	T-A	Hetero	INTERGENIC
SBS	Chr6	10589985	C-G	Hetero	INTRON
SBS	Chr6	22116605	G-A	Hetero	INTERGENIC
SBS	Chr7	18616186	G-A	Hetero	INTERGENIC
SBS	Chr8	39639	A-T	Homo	INTRON
SBS	Chr8	1038474	G-A	Homo	INTERGENIC
SBS	Chr8	19926802	G-A	Hetero	INTERGENIC
SBS	Chr8	27936613	T-C	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Homo	INTERGENIC
SBS	Chr9	6146992	T-C	Hetero	INTERGENIC
SBS	Chr9	13782059	T-C	Hetero	INTERGENIC
SBS	Chr10	3241142	C-T	Hetero	INTERGENIC
SBS	Chr10	4351568	C-T	Hetero	INTERGENIC
SBS	Chr10	7102617	T-A	Hetero	INTERGENIC
SBS	Chr10	9540104	G-A	Hetero	INTERGENIC
SBS	Chr10	11383467	T-A	Hetero	INTERGENIC
SBS	Chr11	1118013	G-A	Hetero	INTERGENIC
SBS	Chr11	5195486	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	10883646	C-T	Hetero	INTRON
SBS	Chr11	12974745	C-A	Hetero	INTERGENIC
SBS	Chr11	13659771	A-G	Hetero	INTERGENIC
SBS	Chr11	18281142	C-T	Hetero	INTERGENIC
SBS	Chr12	1297669	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr12	8919505	A-G	Homo	INTERGENIC
SBS	Chr12	11284082	G-A	Hetero	INTERGENIC
SBS	Chr12	16675877	T-C	Hetero	INTERGENIC
SBS	Chr12	21478895	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	700662	700663	1
Deletion	Chr2	742256	742257	1
Deletion	Chr6	1157881	1157885	4
Deletion	Chr6	11052126	11052135	9
Deletion	Chr12	13511445	13511447	2
Deletion	Chr3	15241495	15241510	15
Deletion	Chr3	16214000	16214085	85
Deletion	Chr4	16736790	16736794	4
Deletion	Chr7	18454620	18454622	2
Deletion	Chr3	18714764	18714783	19
Deletion	Chr11	26719998	26720003	5
Deletion	Chr8	28506548	28506550	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18780555	18783262	OsKitaake07g152900
Inversion	Chr7	18780571	18783272	OsKitaake07g152900
Inversion	Chr2	30885841	31242316	OsKitaake02g320000
Inversion	Chr2	30885846	31222324

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes