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| Mutant Information |
|---|
| Mutant Name | FN1032-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1032-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8400897 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 9384740 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 32696459 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 13142074 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 16149612 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19191572 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16952778 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 24828273 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 36179146 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 16488851 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 16488852 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 29652540 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15471973 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 952097 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 13267761 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6038675 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g072650 |
| SBS | Chr7 | 17893099 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3881204 | G-A | Homo | INTRON | |
| SBS | Chr8 | 5812995 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15181290 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 15181291 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 21939410 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 11267301 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 10804561 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 18444005 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18612029 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 26049901 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29449820 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 14292066 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15463776 | T-C | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1395234 | 1395236 | 2 | |
| Deletion | Chr8 | 3868168 | 3868175 | 7 | |
| Deletion | Chr6 | 3871283 | 3871284 | 1 | |
| Deletion | Chr8 | 5503900 | 5503906 | 6 | OsKitaake08g060100 |
| Deletion | Chr8 | 6247333 | 6247339 | 6 | |
| Deletion | Chr9 | 7704370 | 7704378 | 8 | |
| Deletion | Chr6 | 9041011 | 9041013 | 2 | |
| Deletion | Chr12 | 11688132 | 11688297 | 165 | |
| Deletion | Chr6 | 14922495 | 14922498 | 3 | |
| Deletion | Chr12 | 15709874 | 15709879 | 5 | |
| Deletion | Chr2 | 16017413 | 16017415 | 2 | |
| Deletion | Chr1 | 17461537 | 17461539 | 2 | |
| Deletion | Chr10 | 20618496 | 20618498 | 2 | |
| Deletion | Chr12 | 21337700 | 21337718 | 18 | |
| Deletion | Chr11 | 21702178 | 21702184 | 6 | |
| Deletion | Chr4 | 22407627 | 22407628 | 1 | |
| Deletion | Chr3 | 24798211 | 24798212 | 1 | |
| Deletion | Chr3 | 24828004 | 24828014 | 10 | |
| Deletion | Chr8 | 28109940 | 28109942 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 9052760 | 9052763 | 2 | |
| Insertion | Chr11 | 1855682 | 1855685 | 2 |