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| Mutant Information |
|---|
| Mutant Name | FN1033-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1033-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13933459 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 14543130 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g165100 |
| SBS | Chr1 | 16471661 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16904480 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25156827 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41252181 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 41259681 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 5967347 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 13060540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17282999 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 19704114 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 36237572 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15125869 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 28078358 | C-T | Homo | INTRON | |
| SBS | Chr3 | 28495367 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 5578640 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 11736573 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 20712466 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 2080061 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2532582 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24739324 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 29648798 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g283100 |
| SBS | Chr6 | 24196083 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3386393 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 7355048 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3206459 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4293328 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 14453279 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14460766 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19501123 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2165816 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2165823 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4809345 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 704640 | 704641 | 1 | OsKitaake07g008500 |
| Deletion | Chr4 | 3453602 | 3453606 | 4 | |
| Deletion | Chr3 | 6612444 | 6612445 | 1 | |
| Deletion | Chr1 | 7612918 | 7612922 | 4 | |
| Deletion | Chr4 | 7880376 | 7880383 | 7 | |
| Deletion | Chr7 | 9280653 | 9280654 | 1 | |
| Deletion | Chr9 | 9659418 | 9659423 | 5 | |
| Deletion | Chr8 | 13149060 | 13149064 | 4 | |
| Deletion | Chr4 | 23836001 | 23851000 | 14999 | |
| Deletion | Chr6 | 25073575 | 25073579 | 4 | |
| Deletion | Chr3 | 27751519 | 27751527 | 8 | |
| Deletion | Chr1 | 33400937 | 33400942 | 5 | OsKitaake01g341400 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 15422487 | 15422490 | 2 | |
| Insertion | Chr3 | 4089589 | 4089591 | 1 |