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| Mutant Information |
|---|
| Mutant Name | FN1034-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1034-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 4905428 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 13364383 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22472055 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25052814 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31384395 | A-G | Homo | SPLICE_SITE_REGION | |
| SBS | Chr4 | 4767028 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10935347 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6916437 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 2600766 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 8629322 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 24505223 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 24661809 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 15014257 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 21873927 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8279362 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3288879 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12961728 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 7572353 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13578444 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 15218113 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23120867 | A-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 7105 | 7456 | 351 | |
| Deletion | Chr6 | 10570909 | 10570917 | 8 | OsKitaake06g118700 |
| Deletion | Chr4 | 13450001 | 13464000 | 13999 | |
| Deletion | Chr5 | 15429295 | 15429297 | 2 | |
| Deletion | Chr11 | 15432925 | 15432927 | 2 | |
| Deletion | Chr7 | 21785747 | 21785752 | 5 | |
| Deletion | Chr3 | 22474001 | 22480000 | 5999 | |
| Deletion | Chr2 | 25057569 | 25057571 | 2 | |
| Deletion | Chr11 | 26491001 | 26612000 | 120999 | 9 |
| Deletion | Chr1 | 27637801 | 27637803 | 2 | |
| Deletion | Chr5 | 30165667 | 30165668 | 1 | |
| Deletion | Chr1 | 30598446 | 30598448 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 20391586 | 20391589 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 25942676 | 26497002 | |
| Inversion | Chr11 | 25942684 | 26611859 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 20671213 | Chr4 | 13464340 | |
| Translocation | Chr6 | 20671236 | Chr4 | 13449745 |