Search Kitaake

Mutant Information

Mutant Name	FN1035-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1035-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 25905406 A-T Hetero INTERGENIC
SBS Chr1 29078858 G-A Homo INTERGENIC
SBS Chr1 35472854 A-G Hetero INTRON
SBS Chr1 37343597 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g398500
SBS Chr1 37560119 G-A Hetero INTERGENIC
SBS Chr1 37560120 C-A Hetero INTERGENIC
SBS Chr3 15115308 C-T Hetero INTERGENIC
SBS Chr3 28327650 C-T Homo INTERGENIC
SBS Chr4 571511 G-T Hetero INTRON
SBS Chr4 9632209 G-T Hetero INTERGENIC
SBS Chr4 14220629 C-T Hetero INTERGENIC
SBS Chr4 14220631 C-A Hetero INTERGENIC
SBS Chr4 20275320 C-T Hetero INTERGENIC
SBS Chr4 20275321 C-G Hetero INTERGENIC
SBS Chr4 20275322 C-T Hetero INTERGENIC
SBS Chr4 35103618 G-T Hetero INTRON
SBS Chr5 11779250 G-A Homo INTERGENIC
SBS Chr5 13497690 G-A Hetero INTERGENIC
SBS Chr5 21227959 C-T Homo INTERGENIC
SBS Chr6 8581416 C-A Hetero INTRON
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 7427609 T-C Hetero INTERGENIC
SBS Chr7 14112809 G-C Hetero UTR_3_PRIME
SBS Chr8 8632542 A-T Homo INTERGENIC
SBS Chr8 23328300 G-A Homo INTERGENIC
SBS Chr8 25207780 T-C Homo INTERGENIC
SBS Chr9 6261832 G-T Homo INTERGENIC
SBS Chr10 13749403 G-A Hetero INTERGENIC
SBS Chr10 16254687 C-T Homo INTERGENIC
SBS Chr11 18426007 G-C Homo INTERGENIC
SBS Chr11 26380004 G-A Homo INTERGENIC
SBS Chr11 27389202 C-A Homo INTERGENIC
SBS Chr12 1100111 G-T Hetero INTERGENIC
SBS Chr12 14055766 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr9 3585917 3586098 181
Deletion Chr12 4094808 4094813 5
Deletion Chr9 4105667 4105670 3
Deletion Chr5 6574908 6574909 1
Deletion Chr3 7449767 7449770 3
Deletion Chr5 13318626 13318629 3
Deletion Chr8 13379818 13379825 7
Deletion Chr7 17501331 17501408 77
Deletion Chr1 19605274 19605275 1
Deletion Chr6 20829522 20829528 6
Deletion Chr6 21271616 21271617 1 OsKitaake06g188500
Deletion Chr11 23419269 23419271 2
Deletion Chr5 25305851 25305853 2
Deletion Chr3 28917799 28917811 12

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33754012 33754015 2
Insertion Chr9 4671009 4671012 2
Insertion Chr10 11322007 11322010 2
Insertion Chr2 13850924 13850926 1
Insertion Chr2 28849671 28849673 1
Insertion Chr12 14779926 14779928 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	25905406	A-T	Hetero	INTERGENIC
SBS	Chr1	29078858	G-A	Homo	INTERGENIC
SBS	Chr1	35472854	A-G	Hetero	INTRON
SBS	Chr1	37343597	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g398500
SBS	Chr1	37560119	G-A	Hetero	INTERGENIC
SBS	Chr1	37560120	C-A	Hetero	INTERGENIC
SBS	Chr3	15115308	C-T	Hetero	INTERGENIC
SBS	Chr3	28327650	C-T	Homo	INTERGENIC
SBS	Chr4	571511	G-T	Hetero	INTRON
SBS	Chr4	9632209	G-T	Hetero	INTERGENIC
SBS	Chr4	14220629	C-T	Hetero	INTERGENIC
SBS	Chr4	14220631	C-A	Hetero	INTERGENIC
SBS	Chr4	20275320	C-T	Hetero	INTERGENIC
SBS	Chr4	20275321	C-G	Hetero	INTERGENIC
SBS	Chr4	20275322	C-T	Hetero	INTERGENIC
SBS	Chr4	35103618	G-T	Hetero	INTRON
SBS	Chr5	11779250	G-A	Homo	INTERGENIC
SBS	Chr5	13497690	G-A	Hetero	INTERGENIC
SBS	Chr5	21227959	C-T	Homo	INTERGENIC
SBS	Chr6	8581416	C-A	Hetero	INTRON
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	7427609	T-C	Hetero	INTERGENIC
SBS	Chr7	14112809	G-C	Hetero	UTR_3_PRIME
SBS	Chr8	8632542	A-T	Homo	INTERGENIC
SBS	Chr8	23328300	G-A	Homo	INTERGENIC
SBS	Chr8	25207780	T-C	Homo	INTERGENIC
SBS	Chr9	6261832	G-T	Homo	INTERGENIC
SBS	Chr10	13749403	G-A	Hetero	INTERGENIC
SBS	Chr10	16254687	C-T	Homo	INTERGENIC
SBS	Chr11	18426007	G-C	Homo	INTERGENIC
SBS	Chr11	26380004	G-A	Homo	INTERGENIC
SBS	Chr11	27389202	C-A	Homo	INTERGENIC
SBS	Chr12	1100111	G-T	Hetero	INTERGENIC
SBS	Chr12	14055766	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr9	3585917	3586098	181
Deletion	Chr12	4094808	4094813	5
Deletion	Chr9	4105667	4105670	3
Deletion	Chr5	6574908	6574909	1
Deletion	Chr3	7449767	7449770	3
Deletion	Chr5	13318626	13318629	3
Deletion	Chr8	13379818	13379825	7
Deletion	Chr7	17501331	17501408	77
Deletion	Chr1	19605274	19605275	1
Deletion	Chr6	20829522	20829528	6
Deletion	Chr6	21271616	21271617	1	OsKitaake06g188500
Deletion	Chr11	23419269	23419271	2
Deletion	Chr5	25305851	25305853	2
Deletion	Chr3	28917799	28917811	12

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes