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| Mutant Information |
|---|
| Mutant Name | FN1036-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1036-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7770872 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 17108787 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 20574327 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 26035835 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29228037 | G-T | Homo | STOP_GAINED | OsKitaake01g284700 |
| SBS | Chr1 | 39689608 | G-T | Homo | INTRON | |
| SBS | Chr2 | 9434741 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 14778772 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26767461 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33994056 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 1387733 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 967870 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 4737118 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 21480368 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 23299557 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 5249728 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6972260 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g090400 |
| SBS | Chr6 | 23614514 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7375440 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 15942677 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11957776 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 15583279 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr9 | 11442975 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 12900348 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14459657 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15712066 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g111500 |
| SBS | Chr9 | 18114384 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g139200 |
| SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4135693 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 9860332 | G-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1832376 | 1832378 | 2 | |
| Deletion | Chr9 | 2737607 | 2737608 | 1 | |
| Deletion | Chr7 | 11621919 | 11621922 | 3 | |
| Deletion | Chr5 | 12394221 | 12394224 | 3 | |
| Deletion | Chr11 | 12459798 | 12459799 | 1 | |
| Deletion | Chr5 | 13870598 | 13870599 | 1 | |
| Deletion | Chr4 | 16862545 | 16862549 | 4 | |
| Deletion | Chr8 | 19059001 | 19480000 | 420999 | 23 |
| Deletion | Chr4 | 20243371 | 20243372 | 1 | |
| Deletion | Chr5 | 24347625 | 24347629 | 4 | |
| Deletion | Chr12 | 24980778 | 24980785 | 7 | |
| Deletion | Chr2 | 27791231 | 27791232 | 1 | OsKitaake02g279400 |
| Deletion | Chr6 | 29635423 | 29635432 | 9 | OsKitaake06g275900 |
| Deletion | Chr2 | 36122583 | 36122584 | 1 |
Insertions: 5
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 18815550 | Chr2 | 24431498 | |
| Translocation | Chr8 | 18815631 | Chr2 | 24434080 | |
| Translocation | Chr8 | 21239758 | Chr7 | 21844725 | OsKitaake08g159700 |