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Mutant Information

Mutant Name	FN1037-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1037-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2060407 G-A Hetero INTERGENIC
SBS Chr1 37898527 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 37898600 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g404400
SBS Chr2 3956157 G-A Hetero INTERGENIC
SBS Chr2 20608664 G-A Hetero INTERGENIC
SBS Chr2 21180524 A-T Hetero INTERGENIC
SBS Chr3 21955295 G-A Hetero INTERGENIC
SBS Chr3 29256975 G-A Hetero START_GAINED
SBS Chr3 33581081 C-T Hetero INTERGENIC
SBS Chr4 5514439 G-T Homo INTERGENIC
SBS Chr4 11090742 G-T Homo INTERGENIC
SBS Chr4 13897655 G-C Hetero INTERGENIC
SBS Chr5 8828016 C-T Homo INTRON
SBS Chr5 17841192 C-T Hetero INTRON
SBS Chr5 18090247 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g140800
SBS Chr6 1186920 T-A Homo INTERGENIC
SBS Chr6 3339165 G-A Homo INTERGENIC
SBS Chr6 12618191 T-G Hetero INTERGENIC
SBS Chr6 17031638 G-A Hetero INTERGENIC
SBS Chr7 7942863 T-C Hetero INTERGENIC
SBS Chr7 10409595 G-A Hetero INTERGENIC
SBS Chr8 4076454 G-A Hetero INTERGENIC
SBS Chr8 15415606 C-A Homo INTERGENIC
SBS Chr10 22114560 T-A Homo INTRON
SBS Chr10 22223271 T-A Homo UTR_3_PRIME
SBS Chr11 8840421 G-A Hetero INTERGENIC
SBS Chr11 9462793 A-T Hetero INTRON
SBS Chr11 12529461 C-T Hetero INTERGENIC
SBS Chr11 21578746 C-A Hetero INTERGENIC
SBS Chr11 23794062 C-T Homo INTERGENIC
SBS Chr11 27246463 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g222700
SBS Chr12 5956258 A-G Hetero INTERGENIC
SBS Chr12 17240193 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g126900
SBS Chr12 25449284 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 537844 537846 2
Deletion Chr4 918259 918261 2
Deletion Chr11 1809882 1809883 1
Deletion Chr6 2250010 2250012 2
Deletion Chr9 5493934 5493937 3
Deletion Chr7 8313001 8505000 191999 10
Deletion Chr12 17240626 17240632 6
Deletion Chr9 18779765 18779773 8
Deletion Chr4 23270529 23270538 9
Deletion Chr3 24720292 24720294 2
Deletion Chr3 25033729 25033735 6

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 8188439 8508664

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1886890 Chr2 22304428 OsKitaake09g010200
Translocation Chr9 1888270 Chr2 22304438 OsKitaake09g010200
Translocation Chr6 3874605 Chr5 17932461 OsKitaake05g139000
Translocation Chr6 3875196 Chr5 17932475 OsKitaake05g139000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2060407	G-A	Hetero	INTERGENIC
SBS	Chr1	37898527	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	37898600	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g404400
SBS	Chr2	3956157	G-A	Hetero	INTERGENIC
SBS	Chr2	20608664	G-A	Hetero	INTERGENIC
SBS	Chr2	21180524	A-T	Hetero	INTERGENIC
SBS	Chr3	21955295	G-A	Hetero	INTERGENIC
SBS	Chr3	29256975	G-A	Hetero	START_GAINED
SBS	Chr3	33581081	C-T	Hetero	INTERGENIC
SBS	Chr4	5514439	G-T	Homo	INTERGENIC
SBS	Chr4	11090742	G-T	Homo	INTERGENIC
SBS	Chr4	13897655	G-C	Hetero	INTERGENIC
SBS	Chr5	8828016	C-T	Homo	INTRON
SBS	Chr5	17841192	C-T	Hetero	INTRON
SBS	Chr5	18090247	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g140800
SBS	Chr6	1186920	T-A	Homo	INTERGENIC
SBS	Chr6	3339165	G-A	Homo	INTERGENIC
SBS	Chr6	12618191	T-G	Hetero	INTERGENIC
SBS	Chr6	17031638	G-A	Hetero	INTERGENIC
SBS	Chr7	7942863	T-C	Hetero	INTERGENIC
SBS	Chr7	10409595	G-A	Hetero	INTERGENIC
SBS	Chr8	4076454	G-A	Hetero	INTERGENIC
SBS	Chr8	15415606	C-A	Homo	INTERGENIC
SBS	Chr10	22114560	T-A	Homo	INTRON
SBS	Chr10	22223271	T-A	Homo	UTR_3_PRIME
SBS	Chr11	8840421	G-A	Hetero	INTERGENIC
SBS	Chr11	9462793	A-T	Hetero	INTRON
SBS	Chr11	12529461	C-T	Hetero	INTERGENIC
SBS	Chr11	21578746	C-A	Hetero	INTERGENIC
SBS	Chr11	23794062	C-T	Homo	INTERGENIC
SBS	Chr11	27246463	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g222700
SBS	Chr12	5956258	A-G	Hetero	INTERGENIC
SBS	Chr12	17240193	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g126900
SBS	Chr12	25449284	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	537844	537846	2
Deletion	Chr4	918259	918261	2
Deletion	Chr11	1809882	1809883	1
Deletion	Chr6	2250010	2250012	2
Deletion	Chr9	5493934	5493937	3
Deletion	Chr7	8313001	8505000	191999	10
Deletion	Chr12	17240626	17240632	6
Deletion	Chr9	18779765	18779773	8
Deletion	Chr4	23270529	23270538	9
Deletion	Chr3	24720292	24720294	2
Deletion	Chr3	25033729	25033735	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8188439	8508664

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes