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| Mutant Information |
|---|
| Mutant Name | FN1038-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1038-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2778569 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6183354 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g083900 |
| SBS | Chr2 | 21754968 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 24762473 | A-T | Hetero | START_GAINED | |
| SBS | Chr2 | 26559266 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 29732026 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11757980 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16091068 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 20205771 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 8604372 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11420330 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5229520 | C-A | Homo | INTRON | |
| SBS | Chr6 | 9262019 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 9262020 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11513500 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11513501 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11514484 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20123851 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 23766753 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 25402364 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8110852 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 11313323 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 4605397 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 17275258 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2291001 | 2301000 | 9999 | OsKitaake10g018600 |
| Deletion | Chr3 | 2855637 | 2855643 | 6 | |
| Deletion | Chr1 | 4728284 | 4728286 | 2 | |
| Deletion | Chr12 | 7194445 | 7194446 | 1 | |
| Deletion | Chr5 | 9161533 | 9161542 | 9 | |
| Deletion | Chr5 | 9274308 | 9274309 | 1 | |
| Deletion | Chr9 | 9928392 | 9928396 | 4 | |
| Deletion | Chr2 | 13947082 | 13947086 | 4 | |
| Deletion | Chr9 | 16181001 | 16221000 | 39999 | 7 |
| Deletion | Chr10 | 16615568 | 16615569 | 1 | |
| Deletion | Chr6 | 19735131 | 19735499 | 368 | |
| Deletion | Chr6 | 27483741 | 27483749 | 8 | |
| Deletion | Chr3 | 31139129 | 31139130 | 1 | |
| Deletion | Chr4 | 31194846 | 31194850 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 16209249 | 16209252 | 2 | |
| Insertion | Chr6 | 8630317 | 8630320 | 2 | |
| Insertion | Chr12 | 10016519 | 10016522 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 25684422 | Chr1 | 21327127 |