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| Mutant Information |
|---|
| Mutant Name | FN1039-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1039-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32128275 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34960577 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18595982 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 24905766 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 34053053 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g353700 |
| SBS | Chr3 | 3319790 | C-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 3428348 | G-T | Homo | INTRON | |
| SBS | Chr3 | 4329870 | C-T | Homo | SPLICE_SITE_REGION | |
| SBS | Chr3 | 14861492 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 36258620 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g401800 |
| SBS | Chr4 | 17580099 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 1570489 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1570593 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 10118479 | G-T | Hetero | INTRON | |
| SBS | Chr5 | 22580842 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11114981 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16965949 | T-A | Homo | INTRON | |
| SBS | Chr6 | 17604007 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 25479075 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 28372928 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30992231 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 669705 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 10820042 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 24309849 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 15124271 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 7686729 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8867550 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12862166 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12497301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13244873 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13356780 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19085249 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 3793813 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13559725 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15658940 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15658941 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23328006 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 579874 | 579875 | 1 | OsKitaake08g008400 |
| Deletion | Chr4 | 3109458 | 3109464 | 6 | OsKitaake04g016700 |
| Deletion | Chr11 | 5831927 | 5832153 | 226 | |
| Deletion | Chr1 | 7353001 | 7360000 | 6999 | |
| Deletion | Chr4 | 9519703 | 9519704 | 1 | |
| Deletion | Chr4 | 12165479 | 12165480 | 1 | |
| Deletion | Chr11 | 12472477 | 12472529 | 52 | |
| Deletion | Chr12 | 12592001 | 12612000 | 19999 | 5 |
| Deletion | Chr7 | 13202120 | 13202121 | 1 | |
| Deletion | Chr9 | 15127001 | 15223000 | 95999 | 11 |
| Deletion | Chr6 | 27729824 | 27729826 | 2 | |
| Deletion | Chr4 | 35851292 | 35851295 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 8937214 | 8937218 | 3 | |
| Insertion | Chr8 | 4333905 | 4333908 | 2 | |
| Insertion | Chr11 | 18910510 | 18910513 | 2 | |
| Insertion | Chr12 | 18579867 | 18579870 | 2 |