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Mutant Information

Mutant Name	FN1040-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1040-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23079947 A-C Homo INTERGENIC
SBS Chr2 12417805 C-T Homo INTERGENIC
SBS Chr2 35318991 T-A Homo INTRON
SBS Chr2 35318992 T-A Homo INTRON
SBS Chr2 36839383 G-C Homo INTERGENIC
SBS Chr3 10271822 C-T Hetero INTERGENIC
SBS Chr3 10820519 G-A Hetero INTERGENIC
SBS Chr3 22167137 T-G Hetero INTERGENIC
SBS Chr3 31082286 T-A Homo INTERGENIC
SBS Chr3 34286959 G-A Homo INTRON
SBS Chr4 1386088 T-A Hetero INTERGENIC
SBS Chr4 12262415 T-C Hetero INTERGENIC
SBS Chr4 17272935 C-T Hetero INTERGENIC
SBS Chr4 19062027 T-C Hetero INTERGENIC
SBS Chr4 22172101 C-G Hetero INTERGENIC
SBS Chr4 25956980 C-T Hetero INTERGENIC
SBS Chr4 35380246 C-T Hetero INTERGENIC
SBS Chr5 12708480 A-C Hetero INTERGENIC
SBS Chr5 16210850 C-T Hetero INTERGENIC
SBS Chr5 16490245 G-T Hetero INTERGENIC
SBS Chr6 15815512 A-G Hetero INTERGENIC
SBS Chr7 18766946 G-A Hetero INTERGENIC
SBS Chr9 8994018 A-T Hetero UTR_3_PRIME
SBS Chr10 3240848 C-T Hetero INTERGENIC
SBS Chr10 13141350 T-C Hetero INTERGENIC
SBS Chr11 16998377 G-A Homo INTERGENIC
SBS Chr11 21697997 T-C Hetero INTERGENIC
SBS Chr11 23464376 A-G Hetero INTERGENIC
SBS Chr11 23963386 T-A Hetero INTRON
SBS Chr11 23963387 C-T Hetero INTRON
SBS Chr11 26565899 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g216000
SBS Chr12 489411 A-G Homo INTERGENIC
SBS Chr12 13527551 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 728560 728562 2
Deletion Chr2 2030751 2030755 4
Deletion Chr12 6891790 6891796 6
Deletion Chr1 8055126 8055146 20
Deletion Chr1 11150174 11150175 1
Deletion Chr2 12207765 12207772 7
Deletion Chr2 13932105 13932114 9
Deletion Chr11 16666870 16666875 5
Deletion Chr3 17966744 17966745 1
Deletion Chr12 20397907 20397910 3
Deletion Chr2 21330932 21330936 4
Deletion Chr1 21945511 21945523 12
Deletion Chr6 22445210 22445213 3
Deletion Chr2 24760871 24760872 1
Deletion Chr2 25905064 25905081 17
Deletion Chr3 30361829 30361843 14
Deletion Chr4 31288732 31288737 5
Deletion Chr2 36600599 36600601 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22426254 22426257 2
Insertion Chr2 4471064 4471067 2
Insertion Chr4 33669529 33669532 2
Insertion Chr5 6869274 6869277 2
Insertion Chr5 7034262 7034265 2
Insertion Chr12 17394094 17394098 3
Insertion Chr4 9891532 9891534 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3051649 3700173
Inversion Chr12 3700177 4042114 OsKitaake12g055000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23079947	A-C	Homo	INTERGENIC
SBS	Chr2	12417805	C-T	Homo	INTERGENIC
SBS	Chr2	35318991	T-A	Homo	INTRON
SBS	Chr2	35318992	T-A	Homo	INTRON
SBS	Chr2	36839383	G-C	Homo	INTERGENIC
SBS	Chr3	10271822	C-T	Hetero	INTERGENIC
SBS	Chr3	10820519	G-A	Hetero	INTERGENIC
SBS	Chr3	22167137	T-G	Hetero	INTERGENIC
SBS	Chr3	31082286	T-A	Homo	INTERGENIC
SBS	Chr3	34286959	G-A	Homo	INTRON
SBS	Chr4	1386088	T-A	Hetero	INTERGENIC
SBS	Chr4	12262415	T-C	Hetero	INTERGENIC
SBS	Chr4	17272935	C-T	Hetero	INTERGENIC
SBS	Chr4	19062027	T-C	Hetero	INTERGENIC
SBS	Chr4	22172101	C-G	Hetero	INTERGENIC
SBS	Chr4	25956980	C-T	Hetero	INTERGENIC
SBS	Chr4	35380246	C-T	Hetero	INTERGENIC
SBS	Chr5	12708480	A-C	Hetero	INTERGENIC
SBS	Chr5	16210850	C-T	Hetero	INTERGENIC
SBS	Chr5	16490245	G-T	Hetero	INTERGENIC
SBS	Chr6	15815512	A-G	Hetero	INTERGENIC
SBS	Chr7	18766946	G-A	Hetero	INTERGENIC
SBS	Chr9	8994018	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	3240848	C-T	Hetero	INTERGENIC
SBS	Chr10	13141350	T-C	Hetero	INTERGENIC
SBS	Chr11	16998377	G-A	Homo	INTERGENIC
SBS	Chr11	21697997	T-C	Hetero	INTERGENIC
SBS	Chr11	23464376	A-G	Hetero	INTERGENIC
SBS	Chr11	23963386	T-A	Hetero	INTRON
SBS	Chr11	23963387	C-T	Hetero	INTRON
SBS	Chr11	26565899	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g216000
SBS	Chr12	489411	A-G	Homo	INTERGENIC
SBS	Chr12	13527551	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	728560	728562	2
Deletion	Chr2	2030751	2030755	4
Deletion	Chr12	6891790	6891796	6
Deletion	Chr1	8055126	8055146	20
Deletion	Chr1	11150174	11150175	1
Deletion	Chr2	12207765	12207772	7
Deletion	Chr2	13932105	13932114	9
Deletion	Chr11	16666870	16666875	5
Deletion	Chr3	17966744	17966745	1
Deletion	Chr12	20397907	20397910	3
Deletion	Chr2	21330932	21330936	4
Deletion	Chr1	21945511	21945523	12
Deletion	Chr6	22445210	22445213	3
Deletion	Chr2	24760871	24760872	1
Deletion	Chr2	25905064	25905081	17
Deletion	Chr3	30361829	30361843	14
Deletion	Chr4	31288732	31288737	5
Deletion	Chr2	36600599	36600601	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3051649	3700173
Inversion	Chr12	3700177	4042114	OsKitaake12g055000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes