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Mutant Information

Mutant Name	FN1042-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1042-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2082991 A-G Homo INTRON
SBS Chr1 12246902 C-T Homo INTERGENIC
SBS Chr1 15627471 C-T Homo INTERGENIC
SBS Chr1 19141113 G-C Hetero INTERGENIC
SBS Chr1 20079726 G-A Hetero INTERGENIC
SBS Chr1 26029442 G-A Homo INTERGENIC
SBS Chr1 40862777 A-G Hetero UTR_3_PRIME
SBS Chr1 41559743 A-G Hetero INTERGENIC
SBS Chr2 6706443 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g091400
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 13718918 G-C Hetero INTERGENIC
SBS Chr2 15186494 G-T Hetero INTERGENIC
SBS Chr2 20923358 C-A Hetero INTERGENIC
SBS Chr2 24540666 T-A Hetero INTRON
SBS Chr2 24540667 T-A Hetero INTRON
SBS Chr2 31247830 G-A Homo INTERGENIC
SBS Chr2 31247831 C-A Homo INTERGENIC
SBS Chr2 36356354 A-T Homo INTERGENIC
SBS Chr3 17167581 A-C Homo INTERGENIC
SBS Chr3 22230615 C-T Hetero INTERGENIC
SBS Chr3 26010134 C-A Hetero INTERGENIC
SBS Chr4 3043729 G-A Hetero INTERGENIC
SBS Chr4 3043730 G-A Hetero INTERGENIC
SBS Chr4 5284101 T-C Hetero INTERGENIC
SBS Chr4 15746035 G-C Hetero INTERGENIC
SBS Chr4 20504144 G-A Hetero INTERGENIC
SBS Chr4 21226822 C-T Homo INTERGENIC
SBS Chr4 26529927 C-G Hetero INTERGENIC
SBS Chr4 26855066 G-T Hetero INTRON
SBS Chr5 8061765 C-A Homo INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr5 23235685 T-G Homo NON_SYNONYMOUS_CODING OsKitaake05g194200
SBS Chr5 23330559 T-G Homo INTRON
SBS Chr6 2392863 C-T Hetero INTERGENIC
SBS Chr6 3794890 A-T Hetero INTERGENIC
SBS Chr6 3798158 T-A Hetero INTERGENIC
SBS Chr6 7320524 C-T Homo INTERGENIC
SBS Chr6 23325964 C-T Hetero INTERGENIC
SBS Chr7 11668396 G-A Homo INTERGENIC
SBS Chr7 13684925 A-G Hetero INTERGENIC
SBS Chr7 18903337 A-T Homo INTERGENIC
SBS Chr7 21486408 A-C Homo INTERGENIC
SBS Chr9 13433798 G-A Homo INTERGENIC
SBS Chr9 16699306 G-A Hetero INTRON
SBS Chr10 2413576 C-T Hetero INTERGENIC
SBS Chr10 3141887 T-C Homo UTR_3_PRIME
SBS Chr10 16825686 T-A Hetero INTERGENIC
SBS Chr11 15554412 C-T Homo INTERGENIC
SBS Chr11 16342290 C-T Homo INTERGENIC
SBS Chr11 26502971 C-T Hetero INTERGENIC
SBS Chr12 13911281 T-C Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1943195 1943197 2
Deletion Chr11 10241660 10241661 1
Deletion Chr9 12285234 12285235 1
Deletion Chr7 12991964 12992031 67
Deletion Chr10 13264002 13264003 1
Deletion Chr9 14587001 14637000 49999 10
Deletion Chr9 14647001 14658000 10999 OsKitaake09g100200
Deletion Chr6 14886843 14886860 17
Deletion Chr1 15022965 15022971 6
Deletion Chr9 16054001 16129000 74999 8
Deletion Chr3 17471355 17471362 7
Deletion Chr11 23512517 23512518 1
Deletion Chr1 23797370 23797380 10
Deletion Chr4 25760027 25760028 1
Deletion Chr1 27080803 27080913 110
Deletion Chr3 28446936 28446937 1 OsKitaake03g294600
Deletion Chr3 29305494 29305496 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 11249451 11249454 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 14378425 14587073 OsKitaake09g097400
Inversion Chr9 14378472 14658953 OsKitaake09g097400
Inversion Chr4 27388883 27890563 OsKitaake04g199900
Inversion Chr7 29202017 29308005
Inversion Chr7 29202033 29308010

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 23166116 Chr9 14658950 OsKitaake11g183700
Translocation Chr11 23166121 Chr9 14658401 OsKitaake11g183700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2082991	A-G	Homo	INTRON
SBS	Chr1	12246902	C-T	Homo	INTERGENIC
SBS	Chr1	15627471	C-T	Homo	INTERGENIC
SBS	Chr1	19141113	G-C	Hetero	INTERGENIC
SBS	Chr1	20079726	G-A	Hetero	INTERGENIC
SBS	Chr1	26029442	G-A	Homo	INTERGENIC
SBS	Chr1	40862777	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	41559743	A-G	Hetero	INTERGENIC
SBS	Chr2	6706443	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g091400
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	13718918	G-C	Hetero	INTERGENIC
SBS	Chr2	15186494	G-T	Hetero	INTERGENIC
SBS	Chr2	20923358	C-A	Hetero	INTERGENIC
SBS	Chr2	24540666	T-A	Hetero	INTRON
SBS	Chr2	24540667	T-A	Hetero	INTRON
SBS	Chr2	31247830	G-A	Homo	INTERGENIC
SBS	Chr2	31247831	C-A	Homo	INTERGENIC
SBS	Chr2	36356354	A-T	Homo	INTERGENIC
SBS	Chr3	17167581	A-C	Homo	INTERGENIC
SBS	Chr3	22230615	C-T	Hetero	INTERGENIC
SBS	Chr3	26010134	C-A	Hetero	INTERGENIC
SBS	Chr4	3043729	G-A	Hetero	INTERGENIC
SBS	Chr4	3043730	G-A	Hetero	INTERGENIC
SBS	Chr4	5284101	T-C	Hetero	INTERGENIC
SBS	Chr4	15746035	G-C	Hetero	INTERGENIC
SBS	Chr4	20504144	G-A	Hetero	INTERGENIC
SBS	Chr4	21226822	C-T	Homo	INTERGENIC
SBS	Chr4	26529927	C-G	Hetero	INTERGENIC
SBS	Chr4	26855066	G-T	Hetero	INTRON
SBS	Chr5	8061765	C-A	Homo	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr5	23235685	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g194200
SBS	Chr5	23330559	T-G	Homo	INTRON
SBS	Chr6	2392863	C-T	Hetero	INTERGENIC
SBS	Chr6	3794890	A-T	Hetero	INTERGENIC
SBS	Chr6	3798158	T-A	Hetero	INTERGENIC
SBS	Chr6	7320524	C-T	Homo	INTERGENIC
SBS	Chr6	23325964	C-T	Hetero	INTERGENIC
SBS	Chr7	11668396	G-A	Homo	INTERGENIC
SBS	Chr7	13684925	A-G	Hetero	INTERGENIC
SBS	Chr7	18903337	A-T	Homo	INTERGENIC
SBS	Chr7	21486408	A-C	Homo	INTERGENIC
SBS	Chr9	13433798	G-A	Homo	INTERGENIC
SBS	Chr9	16699306	G-A	Hetero	INTRON
SBS	Chr10	2413576	C-T	Hetero	INTERGENIC
SBS	Chr10	3141887	T-C	Homo	UTR_3_PRIME
SBS	Chr10	16825686	T-A	Hetero	INTERGENIC
SBS	Chr11	15554412	C-T	Homo	INTERGENIC
SBS	Chr11	16342290	C-T	Homo	INTERGENIC
SBS	Chr11	26502971	C-T	Hetero	INTERGENIC
SBS	Chr12	13911281	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1943195	1943197	2
Deletion	Chr11	10241660	10241661	1
Deletion	Chr9	12285234	12285235	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr10	13264002	13264003	1
Deletion	Chr9	14587001	14637000	49999	10
Deletion	Chr9	14647001	14658000	10999	OsKitaake09g100200
Deletion	Chr6	14886843	14886860	17
Deletion	Chr1	15022965	15022971	6
Deletion	Chr9	16054001	16129000	74999	8
Deletion	Chr3	17471355	17471362	7
Deletion	Chr11	23512517	23512518	1
Deletion	Chr1	23797370	23797380	10
Deletion	Chr4	25760027	25760028	1
Deletion	Chr1	27080803	27080913	110
Deletion	Chr3	28446936	28446937	1	OsKitaake03g294600
Deletion	Chr3	29305494	29305496	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14378425	14587073	OsKitaake09g097400
Inversion	Chr9	14378472	14658953	OsKitaake09g097400
Inversion	Chr4	27388883	27890563	OsKitaake04g199900
Inversion	Chr7	29202017	29308005
Inversion	Chr7	29202033	29308010

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes