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Mutant Information

Mutant Name	FN1045-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1045-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Homo INTRON
SBS Chr1 8179157 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 15544303 G-A Hetero INTERGENIC
SBS Chr2 7444609 T-A Hetero INTERGENIC
SBS Chr2 17991304 C-A Hetero INTERGENIC
SBS Chr3 25417510 C-T Homo INTERGENIC
SBS Chr4 8968 C-G Hetero INTERGENIC
SBS Chr4 13827015 T-C Homo INTRON
SBS Chr4 24576580 A-G Hetero INTRON
SBS Chr4 26905935 C-A Homo INTRON
SBS Chr6 1822465 C-G Hetero INTERGENIC
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr6 5482532 C-T Homo INTERGENIC
SBS Chr6 9103233 C-T Hetero INTERGENIC
SBS Chr6 9641605 A-C Hetero INTRON
SBS Chr6 18353118 C-T Hetero UTR_3_PRIME
SBS Chr7 8350222 T-C Homo INTERGENIC
SBS Chr7 28114827 C-T Hetero INTERGENIC
SBS Chr8 5995725 C-T Hetero INTERGENIC
SBS Chr8 14277769 T-C Hetero INTERGENIC
SBS Chr8 22738907 C-T Homo INTERGENIC
SBS Chr9 13320429 A-T Homo INTRON
SBS Chr9 13901298 C-A Hetero INTERGENIC
SBS Chr10 14392080 A-T Hetero INTERGENIC
SBS Chr11 12488909 G-A Hetero INTERGENIC
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 19764957 A-T Hetero INTERGENIC
SBS Chr11 23633476 A-T Hetero INTERGENIC
SBS Chr11 25591747 G-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4576288 4576289 1
Deletion Chr4 6531354 6531359 5
Deletion Chr5 6826501 6826509 8
Deletion Chr2 18347087 18347088 1
Deletion Chr4 19163037 19163038 1
Deletion Chr10 21150001 21213000 62999 11
Deletion Chr7 24121099 24121100 1
Deletion Chr6 26702561 26702569 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 13149278 13149281 2
Insertion Chr7 5349381 5349386 4
Insertion Chr8 16521293 16521296 2
Insertion Chr12 774026 774029 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6813748 7367483 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 18438173 Chr3 26545861

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Homo	INTRON
SBS	Chr1	8179157	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	15544303	G-A	Hetero	INTERGENIC
SBS	Chr2	7444609	T-A	Hetero	INTERGENIC
SBS	Chr2	17991304	C-A	Hetero	INTERGENIC
SBS	Chr3	25417510	C-T	Homo	INTERGENIC
SBS	Chr4	8968	C-G	Hetero	INTERGENIC
SBS	Chr4	13827015	T-C	Homo	INTRON
SBS	Chr4	24576580	A-G	Hetero	INTRON
SBS	Chr4	26905935	C-A	Homo	INTRON
SBS	Chr6	1822465	C-G	Hetero	INTERGENIC
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr6	5482532	C-T	Homo	INTERGENIC
SBS	Chr6	9103233	C-T	Hetero	INTERGENIC
SBS	Chr6	9641605	A-C	Hetero	INTRON
SBS	Chr6	18353118	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	8350222	T-C	Homo	INTERGENIC
SBS	Chr7	28114827	C-T	Hetero	INTERGENIC
SBS	Chr8	5995725	C-T	Hetero	INTERGENIC
SBS	Chr8	14277769	T-C	Hetero	INTERGENIC
SBS	Chr8	22738907	C-T	Homo	INTERGENIC
SBS	Chr9	13320429	A-T	Homo	INTRON
SBS	Chr9	13901298	C-A	Hetero	INTERGENIC
SBS	Chr10	14392080	A-T	Hetero	INTERGENIC
SBS	Chr11	12488909	G-A	Hetero	INTERGENIC
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	19764957	A-T	Hetero	INTERGENIC
SBS	Chr11	23633476	A-T	Hetero	INTERGENIC
SBS	Chr11	25591747	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4576288	4576289	1
Deletion	Chr4	6531354	6531359	5
Deletion	Chr5	6826501	6826509	8
Deletion	Chr2	18347087	18347088	1
Deletion	Chr4	19163037	19163038	1
Deletion	Chr10	21150001	21213000	62999	11
Deletion	Chr7	24121099	24121100	1
Deletion	Chr6	26702561	26702569	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6813748	7367483	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes