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| Mutant Information |
|---|
| Mutant Name | FN1046-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1046-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9544059 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 29136971 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36749619 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 41460862 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6938187 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 29035643 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1830106 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9131613 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11265941 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11320883 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21071204 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 26151291 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 1301012 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 3130659 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5837746 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13242216 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 23835957 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24472883 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 1728424 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9568210 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1234457 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 3413925 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g048400 |
| SBS | Chr12 | 3413927 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g048400 |
| SBS | Chr12 | 3425882 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23979112 | T-C | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 687768 | 687775 | 7 | |
| Deletion | Chr7 | 2577578 | 2577583 | 5 | |
| Deletion | Chr4 | 2717817 | 2717819 | 2 | |
| Deletion | Chr4 | 4521001 | 4800000 | 278999 | OsKitaake04g021850 |
| Deletion | Chr12 | 5838473 | 5838479 | 6 | |
| Deletion | Chr10 | 10081440 | 10081442 | 2 | |
| Deletion | Chr3 | 11363148 | 11363154 | 6 | |
| Deletion | Chr1 | 13890667 | 13890680 | 13 | |
| Deletion | Chr12 | 16688001 | 16738000 | 49999 | 2 |
| Deletion | Chr12 | 16740001 | 16820000 | 79999 | OsKitaake12g125433 |
| Deletion | Chr1 | 16943581 | 16943582 | 1 | |
| Deletion | Chr6 | 17143896 | 17143901 | 5 | |
| Deletion | Chr7 | 24124281 | 24124282 | 1 | |
| Deletion | Chr5 | 24525447 | 24525457 | 10 | |
| Deletion | Chr4 | 29982436 | 29982437 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 10320543 | 10320546 | 2 | |
| Insertion | Chr3 | 19007812 | 19007815 | 2 | |
| Insertion | Chr6 | 1373469 | 1373476 | 6 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 4414982 | 4804644 | |
| Inversion | Chr3 | 34404053 | 35272071 | |
| Inversion | Chr3 | 34406130 | 35272077 | OsKitaake03g373600 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 4539293 | Chr3 | 34404065 | |
| Translocation | Chr12 | 4539298 | Chr3 | 34406118 | OsKitaake03g373600 |