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Mutant Information

Mutant Name	FN1047-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1047-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15235570 G-A Hetero INTERGENIC
SBS Chr1 19459119 G-A Hetero INTERGENIC
SBS Chr1 21980311 G-A Hetero INTERGENIC
SBS Chr1 35823285 G-A Hetero SPLICE_SITE_REGION
SBS Chr1 37683527 G-A Hetero INTERGENIC
SBS Chr2 726983 T-C Hetero INTERGENIC
SBS Chr2 19696600 G-A Homo INTERGENIC
SBS Chr2 35568753 C-T Hetero INTERGENIC
SBS Chr2 36601621 C-A Hetero INTRON
SBS Chr3 9966332 T-G Hetero INTERGENIC
SBS Chr3 15538644 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g200100
SBS Chr3 23446747 A-C Hetero INTERGENIC
SBS Chr4 7678127 G-A Hetero UTR_5_PRIME
SBS Chr4 11410655 C-T Hetero INTERGENIC
SBS Chr4 16418414 G-A Hetero INTERGENIC
SBS Chr4 24090051 G-A Homo INTRON
SBS Chr4 24090052 T-A Homo INTRON
SBS Chr4 24090053 G-A Homo INTRON
SBS Chr5 10221891 G-A Hetero INTERGENIC
SBS Chr5 15530736 T-A Hetero INTRON
SBS Chr5 21958933 C-A Homo INTERGENIC
SBS Chr5 23936505 C-A Homo INTERGENIC
SBS Chr6 28698445 A-G Homo INTERGENIC
SBS Chr7 16412867 G-T Hetero INTERGENIC
SBS Chr7 16680526 C-A Hetero INTERGENIC
SBS Chr7 20095345 G-A Hetero UTR_3_PRIME
SBS Chr7 26002765 C-T Homo INTRON
SBS Chr8 8259924 C-G Hetero INTERGENIC
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr9 22459457 G-T Hetero INTERGENIC
SBS Chr10 13785935 C-G Hetero INTRON
SBS Chr11 16928170 G-A Hetero INTERGENIC
SBS Chr11 26606008 C-G Hetero INTERGENIC
SBS Chr12 16009525 T-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3250652 3250656 4
Deletion Chr3 5636133 5636135 2
Deletion Chr9 8025043 8025051 8
Deletion Chr1 10380904 10380906 2
Deletion Chr9 11506574 11506575 1 OsKitaake09g071800
Deletion Chr1 13220304 13220318 14
Deletion Chr11 20275001 20297000 21999 6
Deletion Chr4 20455171 20455183 12
Deletion Chr8 21545001 21571000 25999 10
Deletion Chr5 22482646 22482648 2
Deletion Chr8 22578001 22578007 6
Deletion Chr4 30423375 30423384 9
Deletion Chr2 30619829 30619833 4
Deletion Chr3 34564995 34565012 17

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 26005918 Chr1 39733120
Translocation Chr12 26062683 Chr1 39733124 OsKitaake12g215700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15235570	G-A	Hetero	INTERGENIC
SBS	Chr1	19459119	G-A	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Hetero	INTERGENIC
SBS	Chr1	35823285	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr1	37683527	G-A	Hetero	INTERGENIC
SBS	Chr2	726983	T-C	Hetero	INTERGENIC
SBS	Chr2	19696600	G-A	Homo	INTERGENIC
SBS	Chr2	35568753	C-T	Hetero	INTERGENIC
SBS	Chr2	36601621	C-A	Hetero	INTRON
SBS	Chr3	9966332	T-G	Hetero	INTERGENIC
SBS	Chr3	15538644	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g200100
SBS	Chr3	23446747	A-C	Hetero	INTERGENIC
SBS	Chr4	7678127	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	11410655	C-T	Hetero	INTERGENIC
SBS	Chr4	16418414	G-A	Hetero	INTERGENIC
SBS	Chr4	24090051	G-A	Homo	INTRON
SBS	Chr4	24090052	T-A	Homo	INTRON
SBS	Chr4	24090053	G-A	Homo	INTRON
SBS	Chr5	10221891	G-A	Hetero	INTERGENIC
SBS	Chr5	15530736	T-A	Hetero	INTRON
SBS	Chr5	21958933	C-A	Homo	INTERGENIC
SBS	Chr5	23936505	C-A	Homo	INTERGENIC
SBS	Chr6	28698445	A-G	Homo	INTERGENIC
SBS	Chr7	16412867	G-T	Hetero	INTERGENIC
SBS	Chr7	16680526	C-A	Hetero	INTERGENIC
SBS	Chr7	20095345	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	26002765	C-T	Homo	INTRON
SBS	Chr8	8259924	C-G	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr9	22459457	G-T	Hetero	INTERGENIC
SBS	Chr10	13785935	C-G	Hetero	INTRON
SBS	Chr11	16928170	G-A	Hetero	INTERGENIC
SBS	Chr11	26606008	C-G	Hetero	INTERGENIC
SBS	Chr12	16009525	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3250652	3250656	4
Deletion	Chr3	5636133	5636135	2
Deletion	Chr9	8025043	8025051	8
Deletion	Chr1	10380904	10380906	2
Deletion	Chr9	11506574	11506575	1	OsKitaake09g071800
Deletion	Chr1	13220304	13220318	14
Deletion	Chr11	20275001	20297000	21999	6
Deletion	Chr4	20455171	20455183	12
Deletion	Chr8	21545001	21571000	25999	10
Deletion	Chr5	22482646	22482648	2
Deletion	Chr8	22578001	22578007	6
Deletion	Chr4	30423375	30423384	9
Deletion	Chr2	30619829	30619833	4
Deletion	Chr3	34564995	34565012	17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	26005918	Chr1	39733120
Translocation	Chr12	26062683	Chr1	39733124	OsKitaake12g215700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes